Variant report

Variant	rs7649766
Chromosome Location	chr3:146183337-146183338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:146182166..146183921-chr3:146186517..146188466,2	K562	blood:

Variant related genes	Relation type
ENSG00000163746	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16858389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57270112	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57403235	1.00[AMR][1000 genomes]
rs59940298	0.81[AFR][1000 genomes]
rs6440442	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865707	0.87[AFR][1000 genomes]
rs73865711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865732	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73865744	1.00[AMR][1000 genomes]
rs73865754	1.00[AMR][1000 genomes]
rs73865756	1.00[AMR][1000 genomes]
rs73865761	1.00[AMR][1000 genomes]
rs7614937	1.00[AMR][1000 genomes]
rs7615016	1.00[AMR][1000 genomes]
rs7649720	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877618	chr3:146096182-146192324	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv877622	chr3:146131961-146219740	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:146181000-146184000	Weak transcription	Pancreas	Pancrea
2	chr3:146181600-146185000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:146181600-146185200	Enhancers	NHDF-Ad	bronchial
4	chr3:146181600-146185800	Weak transcription	K562	blood
5	chr3:146181600-146187000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:146181800-146183600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:146181800-146185000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:146182000-146183800	Weak transcription	NHLF	lung
9	chr3:146182400-146185200	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr3:146182600-146184200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr3:146182600-146185200	Enhancers	A549	lung
12	chr3:146182600-146186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:146182800-146183600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr3:146183000-146184000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr3:146183000-146184000	Weak transcription	Osteobl	bone
16	chr3:146183000-146186200	Weak transcription	Fetal Stomach	stomach
17	chr3:146183000-146187000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:146183000-146187000	Weak transcription	HMEC	breast
19	chr3:146183000-146187000	Weak transcription	NHEK	skin
20	chr3:146183200-146183600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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