Variant report

Variant	rs73937433
Chromosome Location	chr2:64132766-64132767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1455265	1.00[EUR][1000 genomes]
rs17028098	1.00[EUR][1000 genomes]
rs17028300	1.00[EUR][1000 genomes]
rs17028343	1.00[EUR][1000 genomes]
rs17028356	1.00[EUR][1000 genomes]
rs57101313	1.00[EUR][1000 genomes]
rs57862698	1.00[EUR][1000 genomes]
rs58051386	1.00[EUR][1000 genomes]
rs59969247	1.00[EUR][1000 genomes]
rs60600949	1.00[EUR][1000 genomes]
rs60715459	1.00[EUR][1000 genomes]
rs61165969	1.00[EUR][1000 genomes]
rs6747989	1.00[EUR][1000 genomes]
rs6758809	1.00[EUR][1000 genomes]
rs6759849	1.00[EUR][1000 genomes]
rs73935025	1.00[EUR][1000 genomes]
rs73935037	1.00[EUR][1000 genomes]
rs7603484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv531376	chr2:64094322-64521876	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv521717	chr2:64104132-64186582	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:64114000-64212000	Weak transcription	Small Intestine	intestine
2	chr2:64114200-64174800	Weak transcription	Right Ventricle	heart
3	chr2:64116800-64138600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr2:64118200-64153600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:64118400-64137800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr2:64119200-64132800	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:64119400-64133200	Weak transcription	Brain Anterior Caudate	brain
8	chr2:64119600-64139600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr2:64126000-64138000	Weak transcription	Brain Angular Gyrus	brain
10	chr2:64126200-64138800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:64127000-64133200	Weak transcription	Placenta	Placenta
12	chr2:64127200-64138000	Weak transcription	HSMMtube	muscle
13	chr2:64127400-64138600	Weak transcription	Psoas Muscle	Psoas
14	chr2:64128200-64134000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr2:64128600-64133200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr2:64129200-64138000	Weak transcription	Left Ventricle	heart
17	chr2:64129400-64133800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:64129600-64133200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr2:64129600-64133200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr2:64129600-64138200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr2:64129600-64138200	Weak transcription	NH-A	brain
22	chr2:64129600-64139000	Weak transcription	Spleen	Spleen
23	chr2:64129600-64153200	Weak transcription	Thymus	Thymus
24	chr2:64129600-64153600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr2:64129600-64153600	Weak transcription	Aorta	Aorta
26	chr2:64129600-64153600	Weak transcription	Pancreas	Pancrea
27	chr2:64129600-64154000	Weak transcription	Colonic Mucosa	Colon
28	chr2:64129600-64164000	Weak transcription	NHLF	lung
29	chr2:64129600-64201000	Weak transcription	Hela-S3	cervix
30	chr2:64129800-64134600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr2:64129800-64135200	Weak transcription	Osteobl	bone
32	chr2:64129800-64154200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr2:64130000-64133200	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr2:64130000-64138000	Weak transcription	Lung	lung
35	chr2:64130000-64153200	Weak transcription	Gastric	stomach
36	chr2:64130000-64153600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr2:64130000-64153800	Weak transcription	Esophagus	oesophagus
38	chr2:64130200-64132800	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr2:64130200-64134400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:64130200-64137800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr2:64130200-64138200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr2:64130200-64149200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr2:64130200-64153200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:64130200-64153600	Weak transcription	Fetal Intestine Small	intestine
45	chr2:64130200-64153600	Weak transcription	Ovary	ovary
46	chr2:64130200-64153800	Weak transcription	Fetal Stomach	stomach
47	chr2:64130400-64132800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr2:64130400-64132800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr2:64130400-64133000	Weak transcription	Fetal Brain Female	brain
50	chr2:64130400-64137000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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