Variant report

Variant	rs1455265
Chromosome Location	chr2:63956588-63956589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17027922	1.00[EUR][1000 genomes]
rs17027970	1.00[EUR][1000 genomes]
rs17028098	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57360299	1.00[EUR][1000 genomes]
rs57518057	1.00[EUR][1000 genomes]
rs57702773	1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs57862698	1.00[EUR][1000 genomes]
rs58051386	1.00[EUR][1000 genomes]
rs58695205	1.00[EUR][1000 genomes]
rs59969247	1.00[EUR][1000 genomes]
rs60600949	1.00[EUR][1000 genomes]
rs61165969	1.00[EUR][1000 genomes]
rs6747989	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6759849	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs73935025	1.00[EUR][1000 genomes]
rs73937433	1.00[EUR][1000 genomes]
rs7603484	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63926800-63956600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:63943000-63956600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63952400-63956600	Weak transcription	HepG2	liver
4	chr2:63953600-63956800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:63954200-63956600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr2:63954200-63956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:63954200-63956800	Enhancers	Liver	Liver
8	chr2:63954400-63956600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr2:63954400-63957000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr2:63954800-63956600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:63954800-63956800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:63955600-63963600	Weak transcription	Aorta	Aorta
13	chr2:63955600-63964200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:63956000-63957600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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