Variant report

Variant	rs61165969
Chromosome Location	chr2:63887821-63887822
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63886236..63889221-chr2:63894013..63896444,2	K562	blood:
2	chr2:63885934..63888803-chr2:63891795..63894476,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1455265	1.00[EUR][1000 genomes]
rs17027850	1.00[EUR][1000 genomes]
rs17027873	1.00[EUR][1000 genomes]
rs17027894	1.00[EUR][1000 genomes]
rs17027897	1.00[EUR][1000 genomes]
rs17027899	1.00[EUR][1000 genomes]
rs17027901	1.00[EUR][1000 genomes]
rs17027902	1.00[EUR][1000 genomes]
rs17027903	1.00[EUR][1000 genomes]
rs17027906	1.00[EUR][1000 genomes]
rs17027922	1.00[EUR][1000 genomes]
rs17027970	1.00[EUR][1000 genomes]
rs17028080	1.00[AMR][1000 genomes]
rs17028098	1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57272995	1.00[EUR][1000 genomes]
rs57360299	1.00[EUR][1000 genomes]
rs57518057	1.00[EUR][1000 genomes]
rs57702773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs58051386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58695205	1.00[EUR][1000 genomes]
rs59969247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60413056	1.00[EUR][1000 genomes]
rs60600949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6747989	1.00[EUR][1000 genomes]
rs6759849	1.00[EUR][1000 genomes]
rs73937433	1.00[EUR][1000 genomes]
rs7603484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63882600-63890400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:63883600-63900400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63884800-63888200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:63885000-63889400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:63885200-63888000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:63885400-63890800	Enhancers	Osteobl	bone
7	chr2:63885600-63888000	Enhancers	Liver	Liver
8	chr2:63885800-63891000	Enhancers	NHDF-Ad	bronchial
9	chr2:63886000-63888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:63886400-63888200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr2:63886400-63888400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:63886800-63889600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:63886800-63890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:63887000-63888600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr2:63887200-63888400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr2:63887200-63890600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:63887400-63888800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr2:63887400-63889000	Enhancers	NHEK	skin
19	chr2:63887400-63889200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr2:63887600-63888600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr2:63887600-63889200	Enhancers	HMEC	breast
22	chr2:63887600-63889200	Enhancers	NH-A	brain
23	chr2:63887600-63889400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr2:63887800-63893000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links