Variant report

Variant	rs57702773
Chromosome Location	chr2:63825751-63825752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:63821702..63823496-chr2:63825130..63826904,2	K562	blood:
2	chr2:63825183..63827204-chr2:64067010..64069226,2	MCF-7	breast:
3	chr2:63815123..63819073-chr2:63825061..63828288,3	MCF-7	breast:
4	chr2:63814652..63820726-chr2:63822860..63830564,18	K562	blood:

Variant related genes	Relation type
ENSG00000014641	Chromatin interaction
ENSG00000143951	Chromatin interaction
ENSG00000169764	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1455265	1.00[EUR][1000 genomes]
rs17027850	1.00[EUR][1000 genomes]
rs17027873	1.00[EUR][1000 genomes]
rs17027894	1.00[EUR][1000 genomes]
rs17027897	1.00[EUR][1000 genomes]
rs17027899	1.00[EUR][1000 genomes]
rs17027901	1.00[EUR][1000 genomes]
rs17027902	1.00[EUR][1000 genomes]
rs17027903	1.00[EUR][1000 genomes]
rs17027906	1.00[EUR][1000 genomes]
rs17027922	1.00[EUR][1000 genomes]
rs17027970	1.00[EUR][1000 genomes]
rs17028080	1.00[AMR][1000 genomes]
rs17028098	1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57272995	1.00[EUR][1000 genomes]
rs57360299	1.00[EUR][1000 genomes]
rs57518057	1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs58051386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58695205	1.00[EUR][1000 genomes]
rs59718895	1.00[EUR][1000 genomes]
rs59969247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59973565	1.00[EUR][1000 genomes]
rs60413056	1.00[EUR][1000 genomes]
rs60600949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61165969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6747989	1.00[EUR][1000 genomes]
rs7603484	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63816600-63830200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:63816800-63831000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:63817000-63827000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr2:63817000-63827000	Weak transcription	Spleen	Spleen
5	chr2:63817000-63827400	Weak transcription	Lung	lung
6	chr2:63817000-63828800	Weak transcription	Pancreas	Pancrea
7	chr2:63817000-63830200	Weak transcription	Esophagus	oesophagus
8	chr2:63817000-63831800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr2:63817200-63828000	Weak transcription	Aorta	Aorta
10	chr2:63817200-63834400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr2:63817400-63831600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr2:63817600-63828600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr2:63818000-63834800	Strong transcription	Fetal Thymus	thymus
14	chr2:63818000-63835400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:63818400-63828000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:63818400-63829800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr2:63818400-63831000	Weak transcription	Gastric	stomach
18	chr2:63818400-63831800	Weak transcription	Colonic Mucosa	Colon
19	chr2:63818400-63831800	Weak transcription	Small Intestine	intestine
20	chr2:63818600-63834800	Strong transcription	Primary T cells from cord blood	blood
21	chr2:63818600-63835800	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:63818800-63831800	Weak transcription	Fetal Brain Male	brain
23	chr2:63818800-63832000	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr2:63819000-63827400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr2:63819200-63825800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr2:63819200-63835000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr2:63819400-63827200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr2:63819400-63829200	Strong transcription	Fetal Muscle Leg	muscle
29	chr2:63819400-63834800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr2:63819600-63834800	Strong transcription	Fetal Muscle Trunk	muscle
31	chr2:63819800-63829400	Strong transcription	Left Ventricle	heart
32	chr2:63820200-63834800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr2:63820200-63834800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr2:63820200-63835200	Strong transcription	HUES6 Cell Line	embryonic stem cell
35	chr2:63820400-63828600	Strong transcription	Fetal Lung	lung
36	chr2:63820400-63829600	Strong transcription	HMEC	breast
37	chr2:63820400-63834600	Strong transcription	Primary B cells from peripheral blood	blood
38	chr2:63820400-63834800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr2:63820400-63835000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr2:63820400-63835000	Strong transcription	Liver	Liver
41	chr2:63820600-63826000	Strong transcription	NH-A	brain
42	chr2:63820600-63834200	Strong transcription	A549	lung
43	chr2:63820600-63834800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr2:63820600-63834800	Strong transcription	Placenta	Placenta
45	chr2:63820600-63835000	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr2:63820800-63827800	Weak transcription	Ovary	ovary
47	chr2:63820800-63834800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr2:63820800-63835600	Strong transcription	Dnd41	blood
49	chr2:63821200-63827400	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:63821200-63834400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links