Variant report

Variant	rs6747989
Chromosome Location	chr2:63994914-63994915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1455265	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17027970	1.00[EUR][1000 genomes]
rs17028098	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56778186	1.00[EUR][1000 genomes]
rs57702773	1.00[EUR][1000 genomes]
rs57840658	1.00[EUR][1000 genomes]
rs57862698	1.00[EUR][1000 genomes]
rs58051386	1.00[EUR][1000 genomes]
rs59969247	1.00[EUR][1000 genomes]
rs60600949	1.00[EUR][1000 genomes]
rs61165969	1.00[EUR][1000 genomes]
rs6758809	1.00[EUR][1000 genomes]
rs6759849	1.00[EUR][1000 genomes]
rs73935025	1.00[EUR][1000 genomes]
rs73935037	1.00[EUR][1000 genomes]
rs73937433	1.00[EUR][1000 genomes]
rs7603484	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1013375	chr2:63969820-64231550	ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63976400-64028600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:63993400-64006600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63994800-64008200	Weak transcription	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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