Variant report
| Variant | rs17028098 |
|---|---|
| Chromosome Location | chr2:63917991-63917992 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000169764 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1455265 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17027873 | 1.00[EUR][1000 genomes] |
| rs17027894 | 1.00[EUR][1000 genomes] |
| rs17027897 | 1.00[EUR][1000 genomes] |
| rs17027899 | 1.00[EUR][1000 genomes] |
| rs17027901 | 1.00[EUR][1000 genomes] |
| rs17027902 | 1.00[EUR][1000 genomes] |
| rs17027903 | 1.00[EUR][1000 genomes] |
| rs17027906 | 1.00[EUR][1000 genomes] |
| rs17027922 | 1.00[EUR][1000 genomes] |
| rs17027970 | 1.00[EUR][1000 genomes] |
| rs56778186 | 1.00[EUR][1000 genomes] |
| rs57272995 | 1.00[EUR][1000 genomes] |
| rs57360299 | 1.00[EUR][1000 genomes] |
| rs57518057 | 1.00[EUR][1000 genomes] |
| rs57702773 | 1.00[EUR][1000 genomes] |
| rs57840658 | 1.00[EUR][1000 genomes] |
| rs58051386 | 1.00[EUR][1000 genomes] |
| rs58695205 | 1.00[EUR][1000 genomes] |
| rs59969247 | 1.00[EUR][1000 genomes] |
| rs60413056 | 1.00[EUR][1000 genomes] |
| rs60600949 | 1.00[EUR][1000 genomes] |
| rs61165969 | 1.00[EUR][1000 genomes] |
| rs6747989 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6759849 | 1.00[EUR][1000 genomes] |
| rs73937433 | 1.00[EUR][1000 genomes] |
| rs7603484 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834242 | chr2:63891249-64045617 | Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:63908800-63923400 | Weak transcription | Adipose Nuclei | Adipose |
| 2 | chr2:63909200-63925600 | Weak transcription | Psoas Muscle | Psoas |
