Variant report

Variant	rs74016594
Chromosome Location	chr15:58478373-58478374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58260270..58262441-chr15:58476385..58479078,2	K562	blood:
2	chr15:58471240..58473438-chr15:58477636..58480344,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55676126	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56114312	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57297157	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57790048	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167317	1.00[EUR][1000 genomes]
rs73428237	1.00[EUR][1000 genomes]
rs74016574	1.00[AFR][1000 genomes]
rs74016575	1.00[AFR][1000 genomes]
rs74016576	1.00[AFR][1000 genomes]
rs74016578	1.00[AFR][1000 genomes]
rs74016579	1.00[AFR][1000 genomes]
rs74016580	1.00[AFR][1000 genomes]
rs74016581	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016584	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016585	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016586	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016589	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016590	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016591	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016595	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016596	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016598	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016599	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016601	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
3	chr15:58473000-58478400	Weak transcription	Spleen	Spleen
4	chr15:58475200-58481000	Weak transcription	K562	blood
5	chr15:58477000-58479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:58477200-58478400	Enhancers	GM12878-XiMat	blood
7	chr15:58477800-58479400	Weak transcription	Liver	Liver
8	chr15:58478200-58478400	Bivalent Enhancer	Primary T cells from cord blood	blood
9	chr15:58478200-58478800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links