Variant report

Variant	rs74016589
Chromosome Location	chr15:58476532-58476533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58260270..58262441-chr15:58476385..58479078,2	K562	blood:
2	chr15:58473604..58477327-chr15:58478403..58482264,4	K562	blood:
3	chr15:58355812..58358960-chr15:58474345..58476655,3	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction
ENSG00000259285	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs55676126	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56114312	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57557175	1.00[AMR][1000 genomes]
rs57790048	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57882243	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs7167317	1.00[EUR][1000 genomes]
rs73428237	1.00[EUR][1000 genomes]
rs74015811	1.00[AMR][1000 genomes]
rs74016540	1.00[AMR][1000 genomes]
rs74016543	1.00[AMR][1000 genomes]
rs74016574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016594	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016595	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016596	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016598	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016599	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016601	1.00[EUR][1000 genomes]
rs74018015	1.00[AMR][1000 genomes]
rs74018016	1.00[AMR][1000 genomes]
rs74018017	1.00[AMR][1000 genomes]
rs74018020	1.00[AMR][1000 genomes]
rs74018027	1.00[AMR][1000 genomes]
rs74018028	1.00[AMR][1000 genomes]
rs74018035	1.00[AMR][1000 genomes]
rs74018817	1.00[AMR][1000 genomes]
rs74018826	1.00[AMR][1000 genomes]
rs74018834	1.00[AMR][1000 genomes]
rs74018836	1.00[AMR][1000 genomes]
rs74018844	1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]
rs8037139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58451200-58481000	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr15:58458400-58477800	Strong transcription	Liver	Liver
3	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
4	chr15:58473000-58477600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:58473000-58478400	Weak transcription	Spleen	Spleen
6	chr15:58475000-58477000	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr15:58475200-58481000	Weak transcription	K562	blood
8	chr15:58476000-58476800	Enhancers	HMEC	breast
9	chr15:58476000-58476800	Enhancers	NHEK	skin
10	chr15:58476000-58477000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:58476200-58477000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:58476400-58478000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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