Variant report

Variant	rs74016598
Chromosome Location	chr15:58481068-58481069
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58304704..58306626-chr15:58479372..58481388,2	K562	blood:
2	chr15:58480377..58482794-chr15:58490469..58493336,2	K562	blood:
3	chr15:58479445..58483146-chr15:58484303..58486814,3	K562	blood:
4	chr15:58473604..58477327-chr15:58478403..58482264,4	K562	blood:
5	chr15:58480797..58483752-chr15:58496881..58499713,2	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction
ENSG00000240934	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55676126	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56114312	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57297157	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57790048	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7167317	1.00[EUR][1000 genomes]
rs73428237	1.00[EUR][1000 genomes]
rs74016574	0.94[AFR][1000 genomes]
rs74016575	0.94[AFR][1000 genomes]
rs74016576	0.94[AFR][1000 genomes]
rs74016578	0.94[AFR][1000 genomes]
rs74016579	0.94[AFR][1000 genomes]
rs74016580	0.94[AFR][1000 genomes]
rs74016581	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016584	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016585	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016586	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016589	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016590	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016591	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016594	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016595	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016596	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016599	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016601	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58471600-58481200	Weak transcription	Right Atrium	heart
2	chr15:58478400-58481400	Weak transcription	GM12878-XiMat	blood
3	chr15:58478800-58483800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:58480800-58482600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:58481000-58481600	Enhancers	K562	blood
6	chr15:58481000-58482800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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