Variant report

Variant	rs74016601
Chromosome Location	chr15:58483521-58483522
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs2414541	1.00[AMR][1000 genomes]
rs55676126	1.00[EUR][1000 genomes]
rs56114312	1.00[EUR][1000 genomes]
rs57297157	1.00[EUR][1000 genomes]
rs57790048	1.00[EUR][1000 genomes]
rs60540003	1.00[AMR][1000 genomes]
rs7167317	1.00[EUR][1000 genomes]
rs73426185	1.00[AMR][1000 genomes]
rs73426188	1.00[AMR][1000 genomes]
rs73428237	1.00[EUR][1000 genomes]
rs74016581	1.00[EUR][1000 genomes]
rs74016584	1.00[EUR][1000 genomes]
rs74016585	1.00[EUR][1000 genomes]
rs74016586	1.00[EUR][1000 genomes]
rs74016589	1.00[EUR][1000 genomes]
rs74016590	1.00[EUR][1000 genomes]
rs74016591	1.00[EUR][1000 genomes]
rs74016594	1.00[EUR][1000 genomes]
rs74016595	1.00[EUR][1000 genomes]
rs74016596	1.00[EUR][1000 genomes]
rs74016598	1.00[EUR][1000 genomes]
rs74016599	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58478800-58483800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:58481600-58485800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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