Variant report

Variant	rs56114312
Chromosome Location	chr15:58493349-58493350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs55676126	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57790048	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57882243	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs7167317	1.00[EUR][1000 genomes]
rs73428237	1.00[EUR][1000 genomes]
rs74015811	1.00[AMR][1000 genomes]
rs74016540	1.00[AMR][1000 genomes]
rs74016543	1.00[AMR][1000 genomes]
rs74016574	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016575	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016576	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016578	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016579	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016580	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016584	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016585	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016586	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016589	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016590	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016591	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74016594	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016595	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016596	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016598	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016599	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74016601	1.00[EUR][1000 genomes]
rs74018015	1.00[AMR][1000 genomes]
rs74018016	1.00[AMR][1000 genomes]
rs74018017	1.00[AMR][1000 genomes]
rs74018020	1.00[AMR][1000 genomes]
rs74018027	1.00[AMR][1000 genomes]
rs74018028	1.00[AMR][1000 genomes]
rs74018035	1.00[AMR][1000 genomes]
rs74018817	1.00[AMR][1000 genomes]
rs74018826	1.00[AMR][1000 genomes]
rs74018834	1.00[AMR][1000 genomes]
rs74018836	1.00[AMR][1000 genomes]
rs74018844	1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]
rs8037139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2752813	chr15:58461006-58507064	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58492800-58494000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr15:58492800-58494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:58492800-58497800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:58492800-58498400	Enhancers	NHDF-Ad	bronchial
5	chr15:58493000-58495200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:58493200-58493600	Enhancers	Brain Hippocampus Middle	brain
7	chr15:58493200-58493800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr15:58493200-58493800	Enhancers	Fetal Brain Male	brain
9	chr15:58493200-58495400	Weak transcription	K562	blood

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