Variant report

Variant	rs74018017
Chromosome Location	chr15:58523196-58523197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs56114312	1.00[AMR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	1.00[AMR][1000 genomes]
rs57882243	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs74015811	1.00[AMR][1000 genomes]
rs74016540	1.00[AMR][1000 genomes]
rs74016543	1.00[AMR][1000 genomes]
rs74016574	1.00[AMR][1000 genomes]
rs74016575	1.00[AMR][1000 genomes]
rs74016576	1.00[AMR][1000 genomes]
rs74016578	1.00[AMR][1000 genomes]
rs74016579	1.00[AMR][1000 genomes]
rs74016580	1.00[AMR][1000 genomes]
rs74016581	1.00[AMR][1000 genomes]
rs74016584	1.00[AMR][1000 genomes]
rs74016585	1.00[AMR][1000 genomes]
rs74016586	1.00[AMR][1000 genomes]
rs74016589	1.00[AMR][1000 genomes]
rs74016590	1.00[AMR][1000 genomes]
rs74016591	1.00[AMR][1000 genomes]
rs74018015	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018035	1.00[AMR][1000 genomes]
rs74018844	1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]
rs8037139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv833024	chr15:58447459-58621963	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1050473	chr15:58479888-58562270	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv904264	chr15:58505122-58588510	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv904265	chr15:58517528-58588510	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58520200-58523400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:58520200-58523400	Enhancers	NHEK	skin
3	chr15:58520400-58523200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr15:58520400-58523200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:58520400-58523200	Enhancers	Left Ventricle	heart
6	chr15:58520400-58523200	Enhancers	Right Atrium	heart
7	chr15:58520400-58523600	Enhancers	HMEC	breast
8	chr15:58520600-58523200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:58520600-58523400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:58521200-58523200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr15:58521200-58524400	Weak transcription	Pancreas	Pancrea
12	chr15:58521400-58523200	Enhancers	Fetal Heart	heart
13	chr15:58521400-58525400	Weak transcription	Hela-S3	cervix
14	chr15:58521400-58534200	Weak transcription	Liver	Liver
15	chr15:58521600-58524000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr15:58521800-58523400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:58522000-58523200	Enhancers	H9 Cell Line	embryonic stem cell
18	chr15:58522000-58523200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:58522000-58523200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:58522000-58523200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr15:58522000-58525600	Weak transcription	A549	lung
22	chr15:58522200-58523200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr15:58522200-58523400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:58522200-58523600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:58522200-58523600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr15:58522200-58523600	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr15:58522400-58523200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:58522400-58523200	Enhancers	Brain Angular Gyrus	brain
29	chr15:58522400-58523200	Enhancers	Brain Anterior Caudate	brain
30	chr15:58522400-58523400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr15:58522400-58523400	Enhancers	Brain Substantia Nigra	brain
32	chr15:58522400-58524400	Weak transcription	HSMM	muscle
33	chr15:58522400-58526200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:58522400-58528400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:58522600-58523200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
36	chr15:58522600-58523200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:58522600-58523200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
38	chr15:58522600-58523200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:58522600-58523200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr15:58522600-58523200	Enhancers	Fetal Thymus	thymus
41	chr15:58522600-58523400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
42	chr15:58522600-58524200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:58522600-58526200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:58522600-58526200	Weak transcription	HSMMtube	muscle
45	chr15:58522800-58523200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr15:58522800-58524000	Weak transcription	Psoas Muscle	Psoas
47	chr15:58522800-58526000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:58522800-58532200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr15:58523000-58523200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
50	chr15:58523000-58523200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links