Variant report

Variant	rs74016540
Chromosome Location	chr15:58443543-58443544
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-LIPC-4	chr15:58443232-58444712	NONHSAT044098

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs56114312	1.00[AMR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	1.00[AMR][1000 genomes]
rs57557175	1.00[AMR][1000 genomes]
rs57882243	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs74015811	1.00[AMR][1000 genomes]
rs74016543	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74016574	1.00[AMR][1000 genomes]
rs74016575	1.00[AMR][1000 genomes]
rs74016576	1.00[AMR][1000 genomes]
rs74016578	1.00[AMR][1000 genomes]
rs74016579	1.00[AMR][1000 genomes]
rs74016580	1.00[AMR][1000 genomes]
rs74016581	1.00[AMR][1000 genomes]
rs74016584	1.00[AMR][1000 genomes]
rs74016585	1.00[AMR][1000 genomes]
rs74016586	1.00[AMR][1000 genomes]
rs74016589	1.00[AMR][1000 genomes]
rs74016590	1.00[AMR][1000 genomes]
rs74016591	1.00[AMR][1000 genomes]
rs74018015	1.00[AMR][1000 genomes]
rs74018016	1.00[AMR][1000 genomes]
rs74018017	1.00[AMR][1000 genomes]
rs74018020	1.00[AMR][1000 genomes]
rs74018027	1.00[AMR][1000 genomes]
rs74018028	1.00[AMR][1000 genomes]
rs74018035	1.00[AMR][1000 genomes]
rs74018817	1.00[AMR][1000 genomes]
rs74018826	1.00[AMR][1000 genomes]
rs74018834	1.00[AMR][1000 genomes]
rs74018836	1.00[AMR][1000 genomes]
rs74018844	1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]
rs8037139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv974582	chr15:58442227-58448065	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58441000-58463800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:58441800-58447600	Strong transcription	Liver	Liver
3	chr15:58442800-58458800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr15:58443200-58450400	Strong transcription	Primary neutrophils fromperipheralblood	blood

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