Variant report

Variant	rs57882243
Chromosome Location	chr15:58434854-58434855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:58434800-58434913	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:58433341..58435310-chr15:58436697..58438419,2	K562	blood:
2	chr15:58433881..58435963-chr15:58440042..58441729,2	K562	blood:
3	chr15:58240183..58241922-chr15:58434571..58436348,2	K562	blood:
4	chr15:58424607..58427157-chr15:58433686..58435502,2	K562	blood:

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs56114312	1.00[AMR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	1.00[AMR][1000 genomes]
rs57557175	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs74016540	1.00[AMR][1000 genomes]
rs74016543	1.00[AMR][1000 genomes]
rs74016574	1.00[AMR][1000 genomes]
rs74016575	1.00[AMR][1000 genomes]
rs74016576	1.00[AMR][1000 genomes]
rs74016578	1.00[AMR][1000 genomes]
rs74016579	1.00[AMR][1000 genomes]
rs74016580	1.00[AMR][1000 genomes]
rs74016581	1.00[AMR][1000 genomes]
rs74016584	1.00[AMR][1000 genomes]
rs74016585	1.00[AMR][1000 genomes]
rs74016586	1.00[AMR][1000 genomes]
rs74016589	1.00[AMR][1000 genomes]
rs74016590	1.00[AMR][1000 genomes]
rs74016591	1.00[AMR][1000 genomes]
rs74018015	1.00[AMR][1000 genomes]
rs74018016	1.00[AMR][1000 genomes]
rs74018017	1.00[AMR][1000 genomes]
rs74018020	1.00[AMR][1000 genomes]
rs74018027	1.00[AMR][1000 genomes]
rs74018028	1.00[AMR][1000 genomes]
rs74018035	1.00[AMR][1000 genomes]
rs74018817	1.00[AMR][1000 genomes]
rs74018826	1.00[AMR][1000 genomes]
rs74018834	1.00[AMR][1000 genomes]
rs74018836	1.00[AMR][1000 genomes]
rs74018844	1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]
rs8037139	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv457172	chr15:58417895-58457507	Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv569597	chr15:58417895-58457507	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58429600-58436800	Active TSS	Primary hematopoietic stem cells	blood
2	chr15:58430000-58436000	Active TSS	Primary B cells from cord blood	blood
3	chr15:58432600-58436200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr15:58433000-58438800	Weak transcription	NHDF-Ad	bronchial
5	chr15:58433200-58435000	Flanking Active TSS	Liver	Liver
6	chr15:58433200-58438200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:58433400-58441800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:58433600-58436200	Enhancers	K562	blood
9	chr15:58433800-58442400	Weak transcription	Aorta	Aorta
10	chr15:58434000-58438400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:58434600-58437000	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood

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