Variant report

Variant	rs8037139
Chromosome Location	chr15:58363362-58363363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:62)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:62 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:58363023-58363427	K562	blood:	n/a	n/a
2	GATA3	chr15:58363050-58363402	T-47D	breast:	n/a	chr15:58363279-58363291 chr15:58363285-58363292
3	SMC3	chr15:58363037-58363393	GM12878	blood:	n/a	n/a
4	RAD21	chr15:58363032-58363396	HepG2	liver:	n/a	n/a
5	ZNF143	chr15:58363043-58363385	K562	blood:	n/a	n/a
6	RFX5	chr15:58363065-58363406	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr15:58362960-58363380	K562	blood:	n/a	n/a
8	RAD21	chr15:58362958-58363365	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr15:58363034-58363389	A549	lung:	n/a	n/a
10	CTCF	chr15:58363057-58363379	Spleen_OC	spleen:	n/a	n/a
11	CTCF	chr15:58362486-58364010	A549	lung:	n/a	n/a
12	CTCF	chr15:58363085-58363362	GM13977	blood:	n/a	n/a
13	RAD21	chr15:58363019-58363375	IMR90	lung:	n/a	n/a
14	CTCF	chr15:58363013-58363412	IMR90	lung:	n/a	n/a
15	CTCF	chr15:58363069-58363364	Hela-S3	cervix:	n/a	n/a
16	RAD21	chr15:58362801-58363482	HCT-116	colon:	n/a	n/a
17	RAD21	chr15:58362860-58363498	HCT-116	colon:	n/a	n/a
18	SMC3	chr15:58362986-58363563	Hela-S3	cervix:	n/a	n/a
19	MAZ	chr15:58363057-58363370	K562	blood:	n/a	n/a
20	CTCF	chr15:58362991-58363469	MCF-7	breast:	n/a	n/a
21	TEAD4	chr15:58363001-58363376	H1-hESC	embryonic stem cell:	n/a	n/a
22	ZNF143	chr15:58363008-58363398	GM12878	blood:	n/a	n/a
23	RAD21	chr15:58363037-58363367	K562	blood:	n/a	n/a
24	CTCF	chr15:58363057-58363374	Medullo	brain:	n/a	n/a
25	RAD21	chr15:58363034-58363434	H1-hESC	embryonic stem cell:	n/a	n/a
26	RAD21	chr15:58363015-58363390	GM12878	blood:	n/a	n/a
27	CTCF	chr15:58363220-58363370	GM12864	blood:	n/a	n/a
28	ZNF143	chr15:58363041-58363367	H1-hESC	embryonic stem cell:	n/a	n/a
29	CTCF	chr15:58363070-58363367	HUVEC	blood vessel:	n/a	n/a
30	GATA2	chr15:58363039-58363478	HUVEC	blood vessel:	n/a	chr15:58363413-58363423 chr15:58363279-58363291 chr15:58363285-58363292
31	RAD21	chr15:58362784-58363683	SK-N-SH	brain:	n/a	n/a
32	CTCF	chr15:58362986-58363440	A549	lung:	n/a	n/a
33	CTCF	chr15:58363001-58363459	HCT-116	colon:	n/a	n/a
34	RAD21	chr15:58362966-58363406	Hela-S3	cervix:	n/a	n/a
35	JUN	chr15:58363024-58363461	K562	blood:	n/a	n/a
36	GATA3	chr15:58363143-58363513	SH-SY5Y	brain:	n/a	chr15:58363413-58363423 chr15:58363279-58363291 chr15:58363285-58363292
37	RAD21	chr15:58362790-58363513	A549	lung:	n/a	n/a
38	CTCF	chr15:58363008-58363387	A549	lung:	n/a	n/a
39	TEAD4	chr15:58363083-58363384	H1-hESC	embryonic stem cell:	n/a	n/a
40	E2F4	chr15:58362962-58363473	MCF10A-Er-Src	breast:	n/a	n/a
41	RAD21	chr15:58362896-58363499	ECC-1	luminal epithelium:	n/a	n/a
42	RAD21	chr15:58362950-58363430	A549	lung:	n/a	n/a
43	CTCF	chr15:58362999-58363427	T-47D	breast:	n/a	n/a
44	SMC3	chr15:58363052-58363386	K562	blood:	n/a	n/a
45	CTCF	chr15:58363004-58363417	GM12878	blood:	n/a	n/a
46	ARID3A	chr15:58363037-58363469	K562	blood:	n/a	n/a
47	TFAP2A	chr15:58363009-58363366	Hela-S3	cervix:	n/a	chr15:58363184-58363199
48	RAD21	chr15:58362965-58363414	MCF-7	breast:	n/a	n/a
49	CTCF	chr15:58362987-58363396	K562	blood:	n/a	n/a
50	RAD21	chr15:58362952-58363382	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:58362436..58364377-chr15:58373826..58376648,2	K562	blood:
2	chr15:58035424..58036079-chr15:58362751..58363370,2	MCF-7	breast:
3	chr15:58261520..58262217-chr15:58362720..58363602,3	MCF-7	breast:
4	chr15:58362749..58363649-chr15:58474448..58475386,2	MCF-7	breast:
5	chr15:58157674..58158877-chr15:58362866..58363674,3	MCF-7	breast:
6	chr15:58158121..58158992-chr15:58362976..58363943,6	K562	blood:
7	chr15:58361640..58363619-chr15:58378533..58380318,2	K562	blood:

No data

Variant related genes	Relation type
ALDH1A2	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs56114312	1.00[AMR][1000 genomes]
rs56787487	1.00[AMR][1000 genomes]
rs57297157	1.00[AMR][1000 genomes]
rs57557175	1.00[AMR][1000 genomes]
rs57882243	1.00[AMR][1000 genomes]
rs59302780	1.00[AMR][1000 genomes]
rs60201017	1.00[AMR][1000 genomes]
rs74016540	1.00[AMR][1000 genomes]
rs74016543	1.00[AMR][1000 genomes]
rs74016574	1.00[AMR][1000 genomes]
rs74016575	1.00[AMR][1000 genomes]
rs74016576	1.00[AMR][1000 genomes]
rs74016578	1.00[AMR][1000 genomes]
rs74016579	1.00[AMR][1000 genomes]
rs74016580	1.00[AMR][1000 genomes]
rs74016581	1.00[AMR][1000 genomes]
rs74016584	1.00[AMR][1000 genomes]
rs74016585	1.00[AMR][1000 genomes]
rs74016586	1.00[AMR][1000 genomes]
rs74016589	1.00[AMR][1000 genomes]
rs74016590	1.00[AMR][1000 genomes]
rs74016591	1.00[AMR][1000 genomes]
rs74018015	1.00[AMR][1000 genomes]
rs74018016	1.00[AMR][1000 genomes]
rs74018017	1.00[AMR][1000 genomes]
rs74018020	1.00[AMR][1000 genomes]
rs74018817	1.00[AMR][1000 genomes]
rs74018826	1.00[AMR][1000 genomes]
rs74018834	1.00[AMR][1000 genomes]
rs74018836	1.00[AMR][1000 genomes]
rs74018844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74018846	1.00[AMR][1000 genomes]
rs74018847	1.00[AMR][1000 genomes]
rs74018848	1.00[AMR][1000 genomes]
rs74018850	1.00[AMR][1000 genomes]
rs74018851	1.00[AMR][1000 genomes]
rs74018954	1.00[AMR][1000 genomes]
rs74018956	1.00[AMR][1000 genomes]
rs74018958	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv904263	chr15:58340072-58437346	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv569596	chr15:58355798-58408763	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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