Variant report

Variant	rs74103320
Chromosome Location	chr13:87773626-87773627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs55672132	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55920859	1.00[AMR][1000 genomes]
rs56062757	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56195576	1.00[AMR][1000 genomes]
rs56826386	1.00[AMR][1000 genomes]
rs58393016	1.00[AMR][1000 genomes]
rs59690989	1.00[AMR][1000 genomes]
rs59812988	1.00[AMR][1000 genomes]
rs60144006	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558883	1.00[AMR][1000 genomes]
rs73561054	0.93[AFR][1000 genomes]
rs73561055	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74102211	1.00[AMR][1000 genomes]
rs74103207	1.00[AMR][1000 genomes]
rs74103288	1.00[AMR][1000 genomes]
rs74103297	1.00[AMR][1000 genomes]
rs74103381	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103431	1.00[AMR][1000 genomes]
rs74103433	1.00[AMR][1000 genomes]
rs74103652	1.00[AMR][1000 genomes]
rs74103653	1.00[AMR][1000 genomes]
rs74103655	1.00[AMR][1000 genomes]
rs74103656	1.00[AMR][1000 genomes]
rs74103658	1.00[AMR][1000 genomes]
rs74103660	1.00[AMR][1000 genomes]
rs74103667	1.00[AMR][1000 genomes]
rs74103668	1.00[AMR][1000 genomes]
rs74103670	1.00[AMR][1000 genomes]
rs74103671	1.00[AMR][1000 genomes]
rs74103672	1.00[AMR][1000 genomes]
rs74103673	1.00[AMR][1000 genomes]
rs74103690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74103695	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104820	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104839	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74104840	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105309	1.00[AMR][1000 genomes]
rs74105918	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74105932	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv562621	chr13:87192747-87927450	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048011	chr13:87686985-87823029	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037473	chr13:87760891-87805163	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv562628	chr13:87766113-87800578	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3351332	chr13:87771951-87775549	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:87770400-87781000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr13:87772000-87774200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr13:87772200-87776800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr13:87772400-87774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr13:87773000-87776800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr13:87773000-87776800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr13:87773200-87774200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr13:87773400-87775000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr13:87773400-87775400	Weak transcription	Hela-S3	cervix
10	chr13:87773600-87775000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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