Variant report

Variant	rs7520367
Chromosome Location	chr1:94843937-94843938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10493871	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12067988	1.00[ASN][1000 genomes]
rs1687966	1.00[ASN][1000 genomes]
rs17111415	1.00[ASN][1000 genomes]
rs17111448	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1756263	1.00[ASN][1000 genomes]
rs1765643	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2018665	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs728862	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7417304	1.00[ASN][1000 genomes]
rs991562	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94834600-94849400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr1:94839200-94844800	Weak transcription	Stomach Mucosa	stomach
3	chr1:94839400-94846000	Weak transcription	Fetal Thymus	thymus
4	chr1:94841400-94847400	Weak transcription	A549	lung
5	chr1:94842400-94846600	Weak transcription	Thymus	Thymus
6	chr1:94843600-94844000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:94843600-94849200	Enhancers	HepG2	liver
8	chr1:94843800-94844000	Enhancers	K562	blood
9	chr1:94843800-94849200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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