The 2.0 version of rSNPBase

Variant report

Variant rs17111415
Chromosome Location chr1:94790054-94790055
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94776600-94790400 Weak transcription Psoas Muscle Psoas
2 chr1:94778600-94790400 Weak transcription Spleen Spleen
3 chr1:94783200-94792800 Weak transcription Fetal Intestine Small intestine
4 chr1:94784400-94791000 Weak transcription Gastric stomach
5 chr1:94784800-94791400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
6 chr1:94785400-94792000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
7 chr1:94785600-94792200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:94785800-94790800 Weak transcription Fetal Heart heart
9 chr1:94785800-94790800 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:94785800-94791200 Weak transcription Cortex derived primary cultured neurospheres brain
11 chr1:94785800-94791600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr1:94785800-94791800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr1:94786800-94790400 Weak transcription Left Ventricle heart
14 chr1:94787000-94790800 Enhancers HSMMtube muscle
15 chr1:94787200-94790800 Enhancers Hela-S3 cervix
16 chr1:94787200-94791400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
17 chr1:94787200-94791400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
18 chr1:94787200-94795200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr1:94787400-94790200 Flanking Active TSS A549 lung
20 chr1:94787800-94790200 Enhancers ES-I3 Cell Line embryonic stem cell
21 chr1:94787800-94790800 Enhancers Osteobl bone
22 chr1:94787800-94793400 Enhancers Placenta Amnion Placenta Amnion
23 chr1:94788000-94790600 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:94788400-94790800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
25 chr1:94788400-94791000 Weak transcription Adipose Nuclei Adipose
26 chr1:94788400-94791400 Enhancers Breast Myoepithelial Primary Cells Breast
27 chr1:94788400-94792000 Weak transcription H1 Cell Line embryonic stem cell
28 chr1:94788400-94792600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
29 chr1:94788400-94794000 Enhancers NHLF lung
30 chr1:94788600-94790800 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr1:94788600-94790800 Weak transcription Stomach Mucosa stomach
32 chr1:94788600-94792000 Weak transcription ES-WA7 Cell Line embryonic stem cell
33 chr1:94788600-94792000 Weak transcription H9 Cell Line embryonic stem cell
34 chr1:94788600-94792000 Weak transcription HUES48 Cell Line embryonic stem cell
35 chr1:94788600-94792000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr1:94788600-94800800 Weak transcription Pancreas Pancrea
37 chr1:94788800-94790400 Weak transcription Placenta Placenta
38 chr1:94788800-94791000 Weak transcription HepG2 liver
39 chr1:94788800-94792000 Weak transcription Fetal Muscle Trunk muscle
40 chr1:94789000-94790200 Flanking Active TSS HMEC breast
41 chr1:94789000-94790400 Flanking Active TSS HUVEC blood vessel
42 chr1:94789000-94792800 Enhancers Fetal Kidney kidney
43 chr1:94789200-94790200 Flanking Active TSS NHEK skin
44 chr1:94789200-94790400 Flanking Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:94789200-94790400 Weak transcription Fetal Muscle Leg muscle
46 chr1:94789200-94790400 Weak transcription Lung lung
47 chr1:94789400-94790200 Flanking Active TSS NHDF-Ad bronchial
48 chr1:94789400-94790400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
49 chr1:94789400-94790400 Weak transcription Fetal Adrenal Gland Adrenal Gland
50 chr1:94789400-94790800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015