Variant report

Variant	rs1765611
Chromosome Location	chr1:94815759-94815760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94811617..94814291-chr1:94815191..94817382,2	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1591704	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687921	0.83[YRI][hapmap]
rs1687928	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687961	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	0.97[LWK][hapmap];1.00[MEX][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94811000-94816800	Weak transcription	Placenta	Placenta
2	chr1:94814400-94821400	Enhancers	Fetal Thymus	thymus
3	chr1:94814600-94816800	Enhancers	Liver	Liver
4	chr1:94814600-94819000	Enhancers	Thymus	Thymus
5	chr1:94815000-94818000	Enhancers	HepG2	liver
6	chr1:94815200-94816000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:94815400-94816200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:94815400-94816600	Enhancers	Fetal Heart	heart

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