Variant report

Variant	rs1330862
Chromosome Location	chr1:94620168-94620169
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94619287..94620226-chr1:94801188..94801921,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP29-2	chr1:94620107-94620385	NONHSAT004573

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10732730	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874842	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411695	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999272	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	0.89[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847295	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541339	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664141	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695804	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700676	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703362	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513633	0.83[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94608400-94632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94619800-94620200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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