Variant report

Variant	rs6695804
Chromosome Location	chr1:94680275-94680276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10732730	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874842	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165093	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411695	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	0.94[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781574	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847295	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541339	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684982	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700676	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703362	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513633	0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
2	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
3	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
5	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
6	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
7	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:94668600-94684400	Weak transcription	Psoas Muscle	Psoas
9	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:94669200-94681200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr1:94669400-94687600	Weak transcription	Gastric	stomach
12	chr1:94670000-94684000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:94670400-94684400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr1:94670600-94684400	Weak transcription	Fetal Kidney	kidney
15	chr1:94670800-94686400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:94670800-94686400	Weak transcription	Placenta	Placenta
17	chr1:94673800-94680400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:94673800-94682800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:94673800-94683000	Weak transcription	Left Ventricle	heart
20	chr1:94673800-94684400	Weak transcription	Lung	lung
21	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr1:94674000-94697000	Weak transcription	HSMMtube	muscle
24	chr1:94675400-94681000	Strong transcription	NHDF-Ad	bronchial
25	chr1:94675400-94684400	Weak transcription	Adipose Nuclei	Adipose
26	chr1:94675800-94681400	Weak transcription	Liver	Liver
27	chr1:94676200-94680800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:94676200-94682600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:94676200-94687600	Weak transcription	A549	lung
30	chr1:94676400-94683000	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:94676400-94691600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:94676800-94684000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr1:94676800-94684600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr1:94678400-94681400	Strong transcription	HSMM	muscle
35	chr1:94678800-94683400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:94679000-94681600	Strong transcription	NH-A	brain
37	chr1:94679200-94681400	Strong transcription	HMEC	breast
38	chr1:94679200-94685000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr1:94679800-94681200	Strong transcription	HUVEC	blood vessel
40	chr1:94679800-94682200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:94680000-94680400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:94680000-94680400	Enhancers	HepG2	liver
43	chr1:94680000-94680800	Weak transcription	Osteobl	bone
44	chr1:94680000-94681400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr1:94680000-94681400	Weak transcription	NHEK	skin
46	chr1:94680000-94681600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr1:94680000-94681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr1:94680200-94681400	Weak transcription	NHLF	lung
49	chr1:94680200-94682000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:94680200-94683000	Genic enhancers	Muscle Satellite Cultured Cells	--

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