Variant report

Variant	rs1756259
Chromosome Location	chr1:94763207-94763208
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687933	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687936	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756260	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756261	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756262	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	0.81[LWK][hapmap];1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150271	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2210162	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94759400-94764400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:94760600-94765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:94760600-94770000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:94761000-94764400	Enhancers	HUVEC	blood vessel
6	chr1:94761200-94764000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:94761200-94767000	Enhancers	NHLF	lung
8	chr1:94761200-94767400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:94761200-94768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:94761600-94764200	Weak transcription	Fetal Lung	lung
11	chr1:94761600-94764600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:94761600-94765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:94762000-94763600	Enhancers	Left Ventricle	heart
14	chr1:94762000-94763600	Enhancers	Osteobl	bone
15	chr1:94762000-94764400	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr1:94762000-94764400	Weak transcription	HSMM	muscle
17	chr1:94762000-94765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:94762000-94769400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:94762200-94763600	Enhancers	Fetal Stomach	stomach
20	chr1:94762200-94763600	Enhancers	Lung	lung
21	chr1:94762200-94767200	Enhancers	HepG2	liver
22	chr1:94762400-94764200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr1:94762400-94764400	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr1:94762400-94765200	Weak transcription	NH-A	brain
25	chr1:94762600-94763600	Enhancers	Right Atrium	heart
26	chr1:94762600-94763600	Enhancers	Spleen	Spleen
27	chr1:94762600-94764800	Enhancers	Adipose Nuclei	Adipose
28	chr1:94762600-94765600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr1:94762800-94764000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:94762800-94764400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:94762800-94764400	Weak transcription	HMEC	breast
32	chr1:94762800-94764400	Weak transcription	NHEK	skin
33	chr1:94762800-94765200	Weak transcription	Pancreas	Pancrea
34	chr1:94763000-94764200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr1:94763200-94763400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr1:94763200-94763400	Enhancers	Esophagus	oesophagus
37	chr1:94763200-94763400	Enhancers	Ovary	ovary
38	chr1:94763200-94763400	Enhancers	Psoas Muscle	Psoas
39	chr1:94763200-94763400	Enhancers	Right Ventricle	heart
40	chr1:94763200-94764400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr1:94763200-94764400	Weak transcription	NHDF-Ad	bronchial
42	chr1:94763200-94764800	Enhancers	Primary hematopoietic stem cells	blood
43	chr1:94763200-94765800	Enhancers	Duodenum Smooth Muscle	Duodenum

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