The 2.0 version of rSNPBase

Variant report

Variant rs6541339
Chromosome Location chr1:94678225-94678226
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94640000-94684800 Weak transcription Spleen Spleen
2 chr1:94642400-94684600 Weak transcription Fetal Stomach stomach
3 chr1:94644800-94684400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr1:94645000-94687600 Weak transcription Pancreas Pancrea
5 chr1:94649400-94684000 Weak transcription Right Ventricle heart
6 chr1:94649600-94680000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr1:94660400-94681000 Weak transcription Fetal Heart heart
8 chr1:94668400-94687000 Weak transcription HUES64 Cell Line embryonic stem cell
9 chr1:94668600-94684400 Weak transcription Psoas Muscle Psoas
10 chr1:94668800-94699000 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr1:94669200-94681200 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr1:94669400-94687600 Weak transcription Gastric stomach
13 chr1:94670000-94684000 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr1:94670400-94684400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr1:94670600-94679200 Weak transcription NHLF lung
16 chr1:94670600-94684400 Weak transcription Fetal Kidney kidney
17 chr1:94670800-94686400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr1:94670800-94686400 Weak transcription Placenta Placenta
19 chr1:94673800-94680400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
20 chr1:94673800-94682800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:94673800-94683000 Weak transcription Left Ventricle heart
22 chr1:94673800-94684400 Weak transcription Lung lung
23 chr1:94673800-94698600 Weak transcription Fetal Muscle Trunk muscle
24 chr1:94673800-94701000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr1:94674000-94697000 Weak transcription HSMMtube muscle
26 chr1:94674200-94678600 Weak transcription Breast Myoepithelial Primary Cells Breast
27 chr1:94675400-94681000 Strong transcription NHDF-Ad bronchial
28 chr1:94675400-94684400 Weak transcription Adipose Nuclei Adipose
29 chr1:94675600-94680200 Strong transcription Muscle Satellite Cultured Cells --
30 chr1:94675800-94678600 Weak transcription NHEK skin
31 chr1:94675800-94679200 Weak transcription HMEC breast
32 chr1:94675800-94680000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr1:94675800-94681400 Weak transcription Liver Liver
34 chr1:94676000-94679800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
35 chr1:94676200-94679000 Weak transcription NH-A brain
36 chr1:94676200-94680800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr1:94676200-94682600 Weak transcription Fetal Adrenal Gland Adrenal Gland
38 chr1:94676200-94687600 Weak transcription A549 lung
39 chr1:94676400-94680000 Weak transcription HepG2 liver
40 chr1:94676400-94680200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
41 chr1:94676400-94683000 Weak transcription Fetal Muscle Leg muscle
42 chr1:94676400-94691600 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr1:94676600-94678400 Weak transcription HSMM muscle
44 chr1:94676600-94679200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr1:94676800-94684000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr1:94676800-94684600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
47 chr1:94677000-94679200 Weak transcription Osteobl bone
48 chr1:94677200-94679200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:94677600-94679800 Genic enhancers HUVEC blood vessel
50 chr1:94677800-94680200 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

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Last update: Aug 31, 2015