Variant report

Variant	rs12093625
Chromosome Location	chr1:94824102-94824103
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP29-5	chr1:94823700-94824906	NONHSAT004589

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	1.00[ASW][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1591704	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687921	0.83[YRI][hapmap]
rs1687928	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765610	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765611	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765615	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765620	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765642	0.89[YRI][hapmap]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2210162	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94821200-94826000	Enhancers	Liver	Liver
2	chr1:94821400-94824600	Weak transcription	Fetal Thymus	thymus

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