Variant report

Variant	rs1756262
Chromosome Location	chr1:94771289-94771290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541099	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687928	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687932	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687933	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687936	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687961	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756259	0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756260	0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756261	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765611	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765615	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765620	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150271	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]
rs7513633	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
2	chr1:94764800-94772000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94766000-94772600	Weak transcription	Fetal Muscle Leg	muscle
4	chr1:94766000-94774600	Weak transcription	Fetal Lung	lung
5	chr1:94766600-94775600	Weak transcription	Small Intestine	intestine
6	chr1:94767200-94775400	Weak transcription	Liver	Liver
7	chr1:94767400-94773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr1:94768200-94774800	Weak transcription	Spleen	Spleen
9	chr1:94768400-94774200	Weak transcription	Ovary	ovary
10	chr1:94768400-94775800	Weak transcription	Pancreas	Pancrea
11	chr1:94768600-94771800	Weak transcription	Adipose Nuclei	Adipose
12	chr1:94768600-94774200	Weak transcription	Right Atrium	heart
13	chr1:94768600-94774200	Weak transcription	Right Ventricle	heart
14	chr1:94769200-94772000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:94769200-94773400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr1:94769400-94771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:94769400-94772000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:94769400-94772000	Enhancers	HMEC	breast
19	chr1:94769400-94772000	Enhancers	NHEK	skin
20	chr1:94769600-94772000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr1:94769800-94772200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:94769800-94772200	Enhancers	NHDF-Ad	bronchial
23	chr1:94770000-94771400	Enhancers	HepG2	liver
24	chr1:94770000-94771800	Enhancers	NHLF	lung
25	chr1:94770000-94772000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:94770000-94772000	Enhancers	HSMM	muscle
27	chr1:94770000-94772000	Enhancers	Osteobl	bone
28	chr1:94770000-94774200	Weak transcription	Lung	lung
29	chr1:94770200-94772000	Enhancers	NH-A	brain
30	chr1:94770400-94771800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr1:94770600-94772000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr1:94770600-94772000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr1:94770600-94772000	Enhancers	Aorta	Aorta
34	chr1:94770800-94771800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr1:94770800-94771800	Enhancers	Left Ventricle	heart
36	chr1:94770800-94772400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr1:94770800-94773400	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr1:94771000-94773000	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr1:94771000-94773600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr1:94771200-94772600	Weak transcription	HUVEC	blood vessel

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