Variant report

Variant	rs1687928
Chromosome Location	chr1:94811131-94811132
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1591704	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687921	0.89[YRI][hapmap]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1687961	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	0.97[LWK][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765615	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765642	0.83[YRI][hapmap]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94799200-94812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94806400-94814600	Weak transcription	Thymus	Thymus
3	chr1:94808200-94814400	Weak transcription	Fetal Thymus	thymus
4	chr1:94810000-94811800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr1:94810200-94811400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr1:94811000-94811800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr1:94811000-94812400	Weak transcription	HepG2	liver
8	chr1:94811000-94816800	Weak transcription	Placenta	Placenta

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