Variant report

Variant	rs1999272
Chromosome Location	chr1:94639447-94639448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94634875..94637097-chr1:94638561..94641795,3	K562	blood:
2	chr1:94635193..94637097-chr1:94638561..94640426,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10732730	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874842	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165093	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411695	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	0.91[ASW][hapmap];0.87[LWK][hapmap];0.95[MKK][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	0.83[ASW][hapmap];0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847295	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541339	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684982	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695804	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700676	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703362	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513633	0.83[ASW][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94626800-94643400	Weak transcription	Fetal Heart	heart
2	chr1:94631800-94639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr1:94631800-94646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:94634200-94643000	Strong transcription	HUVEC	blood vessel
5	chr1:94634200-94656600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:94634200-94658400	Strong transcription	HSMM	muscle
7	chr1:94634200-94660800	Strong transcription	NH-A	brain
8	chr1:94634200-94661800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr1:94634400-94646400	Strong transcription	Muscle Satellite Cultured Cells	--
11	chr1:94634400-94646600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:94634400-94660400	Strong transcription	NHDF-Ad	bronchial
13	chr1:94634600-94662000	Strong transcription	HMEC	breast
14	chr1:94634800-94644400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:94634800-94645000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr1:94635000-94646800	Weak transcription	Esophagus	oesophagus
17	chr1:94635000-94658000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:94635800-94646200	Strong transcription	Osteobl	bone
19	chr1:94636000-94658400	Strong transcription	Liver	Liver
20	chr1:94636200-94641000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr1:94636200-94644000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:94636600-94641200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr1:94636600-94647400	Strong transcription	Adipose Nuclei	Adipose
25	chr1:94636800-94644200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr1:94636800-94645000	Strong transcription	Skeletal Muscle Female	skeletal muscle
27	chr1:94637600-94650800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr1:94637800-94648800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr1:94637800-94656200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr1:94638000-94644000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:94638200-94641800	Weak transcription	Placenta	Placenta
32	chr1:94638200-94646000	Weak transcription	Hela-S3	cervix
33	chr1:94638200-94646400	Weak transcription	Fetal Lung	lung
34	chr1:94638200-94654400	Weak transcription	Ovary	ovary
35	chr1:94638400-94647400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:94638400-94647800	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr1:94638400-94669200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:94638600-94641000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr1:94638800-94640200	Strong transcription	Placenta Amnion	Placenta Amnion
40	chr1:94638800-94647400	Strong transcription	Fetal Muscle Trunk	muscle
41	chr1:94639000-94639600	Enhancers	Brain Hippocampus Middle	brain
42	chr1:94639000-94640400	Strong transcription	HepG2	liver
43	chr1:94639000-94645200	Strong transcription	Fetal Muscle Leg	muscle
44	chr1:94639000-94647400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:94639000-94647600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:94639200-94642000	Strong transcription	NHLF	lung
47	chr1:94639200-94649000	Weak transcription	Right Atrium	heart
48	chr1:94639400-94639800	Enhancers	Brain Angular Gyrus	brain
49	chr1:94639400-94639800	Enhancers	Brain Cingulate Gyrus	brain
50	chr1:94639400-94639800	Enhancers	Brain Substantia Nigra	brain

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