Variant report

Variant	rs1330857
Chromosome Location	chr1:94773127-94773128
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541099	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687928	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687932	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687933	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687936	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687943	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687961	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756259	0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756260	0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756261	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756262	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765611	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765615	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765620	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150271	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]
rs7513633	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
2	chr1:94766000-94774600	Weak transcription	Fetal Lung	lung
3	chr1:94766600-94775600	Weak transcription	Small Intestine	intestine
4	chr1:94767200-94775400	Weak transcription	Liver	Liver
5	chr1:94767400-94773400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:94768200-94774800	Weak transcription	Spleen	Spleen
7	chr1:94768400-94774200	Weak transcription	Ovary	ovary
8	chr1:94768400-94775800	Weak transcription	Pancreas	Pancrea
9	chr1:94768600-94774200	Weak transcription	Right Atrium	heart
10	chr1:94768600-94774200	Weak transcription	Right Ventricle	heart
11	chr1:94769200-94773400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr1:94770000-94774200	Weak transcription	Lung	lung
13	chr1:94770800-94773400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:94771000-94773600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:94771400-94773800	Weak transcription	HepG2	liver
16	chr1:94771800-94775600	Weak transcription	NHLF	lung
17	chr1:94771800-94775800	Weak transcription	Left Ventricle	heart
18	chr1:94772000-94773200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:94772000-94773800	Weak transcription	Aorta	Aorta
20	chr1:94772000-94774200	Weak transcription	HSMM	muscle
21	chr1:94772000-94774800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr1:94772000-94775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:94772000-94776800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:94772000-94780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:94772000-94781400	Weak transcription	Osteobl	bone
26	chr1:94772200-94775600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:94772400-94773800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr1:94772400-94774200	Weak transcription	Adipose Nuclei	Adipose
29	chr1:94772600-94773200	Enhancers	HUVEC	blood vessel
30	chr1:94772800-94775600	Weak transcription	NHDF-Ad	bronchial
31	chr1:94772800-94776800	Weak transcription	Fetal Muscle Leg	muscle

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