Variant report

Variant	rs1756261
Chromosome Location	chr1:94764924-94764925
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94764343..94765905-chr1:94774402..94776813,2	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs1144301	1.00[EUR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687936	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756259	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756262	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2026199	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150271	1.00[EUR][1000 genomes]
rs2210162	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94752600-94765200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94760600-94765600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr1:94760600-94770000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr1:94761200-94767000	Enhancers	NHLF	lung
5	chr1:94761200-94767400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:94761200-94768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:94761600-94765200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:94762000-94765400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr1:94762000-94769400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:94762200-94767200	Enhancers	HepG2	liver
11	chr1:94762400-94765200	Weak transcription	NH-A	brain
12	chr1:94762600-94765600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
13	chr1:94762800-94765200	Weak transcription	Pancreas	Pancrea
14	chr1:94763200-94765800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr1:94763400-94765200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr1:94763400-94767200	Weak transcription	Right Ventricle	heart
17	chr1:94763400-94775800	Weak transcription	Psoas Muscle	Psoas
18	chr1:94763600-94765200	Weak transcription	Left Ventricle	heart
19	chr1:94763600-94765200	Weak transcription	Lung	lung
20	chr1:94763600-94765200	Weak transcription	Right Atrium	heart
21	chr1:94763600-94765200	Weak transcription	Spleen	Spleen
22	chr1:94764000-94766000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:94764200-94766000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:94764200-94766000	Enhancers	Fetal Lung	lung
25	chr1:94764200-94767200	Enhancers	Liver	Liver
26	chr1:94764200-94767200	Enhancers	Osteobl	bone
27	chr1:94764400-94765600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:94764400-94765600	Enhancers	Ovary	ovary
29	chr1:94764400-94765600	Enhancers	NHEK	skin
30	chr1:94764400-94765800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:94764400-94765800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr1:94764400-94765800	Enhancers	Fetal Stomach	stomach
33	chr1:94764400-94765800	Enhancers	Gastric	stomach
34	chr1:94764400-94766000	Enhancers	Fetal Muscle Leg	muscle
35	chr1:94764400-94766000	Enhancers	Placenta	Placenta
36	chr1:94764400-94766000	Enhancers	Stomach Mucosa	stomach
37	chr1:94764400-94766200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr1:94764400-94766200	Enhancers	Fetal Intestine Large	intestine
39	chr1:94764400-94766200	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr1:94764400-94766200	Enhancers	HSMM	muscle
41	chr1:94764400-94766600	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr1:94764400-94767200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:94764400-94767400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:94764400-94767800	Enhancers	HMEC	breast
45	chr1:94764400-94767800	Enhancers	NHDF-Ad	bronchial
46	chr1:94764600-94765000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr1:94764600-94765600	Enhancers	Hela-S3	cervix
48	chr1:94764600-94765800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr1:94764600-94766400	Enhancers	A549	lung
50	chr1:94764600-94767200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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