Variant report

Variant	rs6664141
Chromosome Location	chr1:94669758-94669759
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94654322..94656006-chr1:94669547..94672112,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10732730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874842	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165093	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781574	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541339	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684982	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695804	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703362	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513633	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94634200-94675200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:94636200-94673400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:94640000-94684800	Weak transcription	Spleen	Spleen
4	chr1:94642400-94684600	Weak transcription	Fetal Stomach	stomach
5	chr1:94644800-94670000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr1:94644800-94684400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:94645000-94687600	Weak transcription	Pancreas	Pancrea
8	chr1:94647200-94675800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:94647800-94676200	Weak transcription	Small Intestine	intestine
10	chr1:94649400-94684000	Weak transcription	Right Ventricle	heart
11	chr1:94649600-94680000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:94657000-94672000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:94660400-94681000	Weak transcription	Fetal Heart	heart
14	chr1:94662000-94670400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr1:94663200-94672400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:94663200-94673000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:94663200-94674600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:94663800-94672200	Strong transcription	NH-A	brain
19	chr1:94664800-94671000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:94664800-94672400	Strong transcription	Adipose Nuclei	Adipose
21	chr1:94664800-94672800	Strong transcription	HSMM	muscle
22	chr1:94665200-94670400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr1:94665200-94670400	Strong transcription	HepG2	liver
24	chr1:94665400-94673400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr1:94665600-94671800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:94666000-94670400	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:94666200-94672200	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr1:94666600-94670000	Strong transcription	Fetal Muscle Trunk	muscle
29	chr1:94666600-94674600	Strong transcription	NHDF-Ad	bronchial
30	chr1:94666800-94670800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:94666800-94671200	Strong transcription	Muscle Satellite Cultured Cells	--
32	chr1:94666800-94671400	Strong transcription	Osteobl	bone
33	chr1:94667000-94670000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:94667000-94670000	Strong transcription	Left Ventricle	heart
35	chr1:94667000-94670400	Strong transcription	Fetal Muscle Leg	muscle
36	chr1:94667000-94670800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr1:94667600-94670200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:94667800-94670000	Strong transcription	Lung	lung
39	chr1:94667800-94670000	Strong transcription	HSMMtube	muscle
40	chr1:94667800-94670600	Strong transcription	NHLF	lung
41	chr1:94668200-94669800	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:94668200-94670800	Strong transcription	Placenta	Placenta
43	chr1:94668200-94673200	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr1:94668400-94670000	Weak transcription	Fetal Kidney	kidney
45	chr1:94668400-94671800	Strong transcription	Liver	Liver
46	chr1:94668400-94674400	Strong transcription	NHEK	skin
47	chr1:94668400-94674800	Weak transcription	Aorta	Aorta
48	chr1:94668400-94687000	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr1:94668600-94672200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:94668600-94684400	Weak transcription	Psoas Muscle	Psoas

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