Variant report

Variant	rs6703362
Chromosome Location	chr1:94626394-94626395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10732730	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874842	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10874843	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165093	0.85[AMR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1330862	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1360364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1411695	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	0.94[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2026199	1.00[EUR][1000 genomes]
rs2065232	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2150271	0.83[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2774924	1.00[EUR][1000 genomes]
rs2781573	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781574	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847200	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847295	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6541339	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6664141	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6684982	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6695804	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6700676	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7513633	0.89[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9432697	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94608400-94632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:94625800-94627200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:94625800-94627400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr1:94626000-94626400	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr1:94626000-94626800	Enhancers	Fetal Heart	heart
6	chr1:94626000-94627000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:94626000-94627000	Enhancers	HSMM	muscle
8	chr1:94626000-94627200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:94626000-94627200	Enhancers	NH-A	brain
10	chr1:94626000-94627200	Enhancers	NHDF-Ad	bronchial
11	chr1:94626000-94627400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:94626200-94626400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:94626200-94626600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr1:94626200-94626600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr1:94626200-94626600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:94626200-94626800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:94626200-94626800	Enhancers	Brain Cingulate Gyrus	brain
18	chr1:94626200-94626800	Enhancers	Rectal Smooth Muscle	rectum
19	chr1:94626200-94626800	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr1:94626200-94626800	Enhancers	NHEK	skin
21	chr1:94626200-94627000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr1:94626200-94627000	Enhancers	HSMMtube	muscle
23	chr1:94626200-94627000	Enhancers	HUVEC	blood vessel
24	chr1:94626200-94627000	Enhancers	Osteobl	bone
25	chr1:94626200-94627200	Enhancers	Skeletal Muscle Male	skeletal muscle

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