Variant report

Variant	rs2026199
Chromosome Location	chr1:94749487-94749488
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94741320..94745215-chr1:94746019..94749869,4	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10732730	1.00[EUR][1000 genomes]
rs10874842	1.00[EUR][1000 genomes]
rs10874843	1.00[EUR][1000 genomes]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330862	1.00[EUR][1000 genomes]
rs1360364	1.00[EUR][1000 genomes]
rs1411693	1.00[EUR][1000 genomes]
rs1411694	1.00[EUR][1000 genomes]
rs1411695	1.00[EUR][1000 genomes]
rs1541097	1.00[EUR][1000 genomes]
rs1541099	1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687933	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687936	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687963	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687964	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756251	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756255	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1756257	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756259	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756260	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756262	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs1888336	1.00[EUR][1000 genomes]
rs1999272	1.00[EUR][1000 genomes]
rs2065232	1.00[EUR][1000 genomes]
rs2150270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2150271	1.00[EUR][1000 genomes]
rs2210162	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2774924	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781573	1.00[EUR][1000 genomes]
rs2781574	1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs4847200	1.00[EUR][1000 genomes]
rs4847295	1.00[EUR][1000 genomes]
rs6541339	1.00[EUR][1000 genomes]
rs6664141	1.00[EUR][1000 genomes]
rs6684982	1.00[EUR][1000 genomes]
rs6695804	1.00[EUR][1000 genomes]
rs6700676	1.00[EUR][1000 genomes]
rs6703362	1.00[EUR][1000 genomes]
rs7513633	1.00[EUR][1000 genomes]
rs7547705	1.00[EUR][1000 genomes]
rs9432451	1.00[EUR][1000 genomes]
rs9432697	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94738400-94750000	Weak transcription	Pancreas	Pancrea
2	chr1:94738400-94750000	Weak transcription	HMEC	breast
3	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
4	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:94745200-94750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94747200-94750200	Weak transcription	Stomach Mucosa	stomach
7	chr1:94747400-94750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:94747600-94749800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:94747600-94749800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:94747600-94750000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr1:94747600-94750000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr1:94747600-94750000	Weak transcription	HSMM	muscle
13	chr1:94747600-94750000	Weak transcription	NH-A	brain
14	chr1:94747600-94750000	Weak transcription	NHLF	lung
15	chr1:94747600-94750000	Weak transcription	Osteobl	bone
16	chr1:94747800-94749600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:94747800-94749800	Weak transcription	HUVEC	blood vessel
18	chr1:94747800-94750200	Weak transcription	Fetal Stomach	stomach
19	chr1:94748200-94750400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:94748400-94750000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:94748600-94750000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:94748600-94750000	Weak transcription	Fetal Heart	heart
23	chr1:94748800-94750200	Enhancers	NHDF-Ad	bronchial
24	chr1:94749200-94750800	Enhancers	Fetal Lung	lung
25	chr1:94749400-94751600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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