Variant report

Variant	rs1144301
Chromosome Location	chr1:95001378-95001379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95001173..95003691-chr1:95006398..95009153,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117525	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11802896	1.00[EUR][1000 genomes]
rs12067988	1.00[EUR][1000 genomes]
rs12093625	1.00[EUR][1000 genomes]
rs1330857	1.00[EUR][1000 genomes]
rs1591704	1.00[EUR][1000 genomes]
rs1687928	1.00[EUR][1000 genomes]
rs1687932	1.00[EUR][1000 genomes]
rs1687933	1.00[EUR][1000 genomes]
rs1687936	1.00[EUR][1000 genomes]
rs1687943	1.00[EUR][1000 genomes]
rs1687961	1.00[EUR][1000 genomes]
rs1687963	1.00[EUR][1000 genomes]
rs1687964	1.00[EUR][1000 genomes]
rs1687966	1.00[EUR][1000 genomes]
rs17111415	1.00[EUR][1000 genomes]
rs1756255	1.00[EUR][1000 genomes]
rs1756257	1.00[EUR][1000 genomes]
rs1756259	1.00[EUR][1000 genomes]
rs1756260	1.00[EUR][1000 genomes]
rs1756261	1.00[EUR][1000 genomes]
rs1756262	1.00[EUR][1000 genomes]
rs1756265	1.00[EUR][1000 genomes]
rs1765610	1.00[EUR][1000 genomes]
rs1765611	1.00[EUR][1000 genomes]
rs1765615	1.00[EUR][1000 genomes]
rs1765620	1.00[EUR][1000 genomes]
rs1765643	1.00[EUR][1000 genomes]
rs2150270	1.00[EUR][1000 genomes]
rs2210162	1.00[EUR][1000 genomes]
rs2786907	1.00[EUR][1000 genomes]
rs698943	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94956200-95004000	Weak transcription	Rectal Smooth Muscle	rectum
2	chr1:94958600-95004200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:94965600-95006400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:94970400-95003800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:94972200-95004400	Weak transcription	A549	lung
6	chr1:94979200-95005000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr1:94986000-95006200	Weak transcription	Liver	Liver
8	chr1:94991600-95004000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:94993600-95001800	Weak transcription	Brain Hippocampus Middle	brain
10	chr1:94993600-95002400	Weak transcription	Stomach Mucosa	stomach
11	chr1:94993600-95002800	Weak transcription	Fetal Brain Male	brain
12	chr1:94993600-95004800	Weak transcription	HSMMtube	muscle
13	chr1:94994000-95002200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr1:94994000-95003600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:94994000-95003800	Weak transcription	Brain Substantia Nigra	brain
16	chr1:94994200-95002000	Strong transcription	Fetal Intestine Large	intestine
17	chr1:94994200-95002800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:94994400-95005400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr1:94994600-95002400	Strong transcription	Cortex derived primary cultured neurospheres	brain
20	chr1:94994600-95003800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:94994600-95005200	Weak transcription	Esophagus	oesophagus
22	chr1:94994600-95006200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:94994800-95001600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr1:94994800-95002400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr1:94995000-95002000	Strong transcription	Duodenum Mucosa	Duodenum
26	chr1:94995000-95002200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:94995200-95002000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:94995200-95006200	Weak transcription	Spleen	Spleen
29	chr1:94995600-95002800	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr1:94995600-95003200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr1:94995600-95003400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr1:94995800-95002000	Strong transcription	NHEK	skin
33	chr1:94995800-95002800	Strong transcription	Hela-S3	cervix
34	chr1:94995800-95003000	Strong transcription	ES-I3 Cell Line	embryonic stem cell
35	chr1:94995800-95004000	Strong transcription	HSMM	muscle
36	chr1:94996000-95001800	Strong transcription	NHDF-Ad	bronchial
37	chr1:94996000-95002200	Strong transcription	Fetal Muscle Leg	muscle
38	chr1:94996200-95001600	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr1:94996200-95002200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:94996400-95001400	Strong transcription	Lung	lung
41	chr1:94996600-95002000	Strong transcription	Fetal Stomach	stomach
42	chr1:94996800-95002600	Weak transcription	Fetal Brain Female	brain
43	chr1:94996800-95005200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:94997600-95005000	Weak transcription	Dnd41	blood
45	chr1:94997600-95005200	Weak transcription	Gastric	stomach
46	chr1:94998000-95001600	Strong transcription	Osteobl	bone
47	chr1:94998000-95004000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr1:94998200-95004000	Weak transcription	Fetal Kidney	kidney
49	chr1:94999000-95001400	Strong transcription	Fetal Intestine Small	intestine
50	chr1:94999000-95001600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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