Variant report

Variant	rs10493871
Chromosome Location	chr1:94821045-94821046
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12067988	1.00[ASN][1000 genomes]
rs1687966	1.00[ASN][1000 genomes]
rs17111415	1.00[ASN][1000 genomes]
rs17111448	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1756263	1.00[ASN][1000 genomes]
rs1765643	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2018665	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3748017	1.00[CHB][hapmap]
rs6692345	1.00[CHB][hapmap]
rs698943	1.00[CHB][hapmap]
rs728862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7417304	1.00[ASN][1000 genomes]
rs7520367	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs991562	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94814400-94821400	Enhancers	Fetal Thymus	thymus
2	chr1:94820600-94821200	Flanking Active TSS	Liver	Liver
3	chr1:94820600-94821400	Enhancers	Thymus	Thymus
4	chr1:94820800-94821400	Flanking Active TSS	HepG2	liver
5	chr1:94821000-94821400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:94821000-94821400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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