Variant report

Variant	rs7639424
Chromosome Location	chr3:115998502-115998503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11918762	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13073491	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1563938	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34840522	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35300468	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35406989	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35910525	0.89[ASN][1000 genomes]
rs55893774	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6438312	0.91[ASN][1000 genomes]
rs6775293	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6809953	0.89[ASN][1000 genomes]
rs7639095	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
3	chr3:115989200-115999000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr3:115992200-115999200	Weak transcription	Fetal Lung	lung
5	chr3:115995800-115999000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr3:115995800-115999000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:115996000-115999000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:115996000-115999000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:115996000-115999200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:115996000-115999200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:115996600-115999400	Enhancers	Colon Smooth Muscle	Colon
12	chr3:115996800-115999000	Enhancers	Rectal Smooth Muscle	rectum
13	chr3:115996800-115999400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:115997200-116017200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:115998200-115999000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:115998200-115999000	Weak transcription	Brain Anterior Caudate	brain
17	chr3:115998200-115999000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:115998200-115999000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:115998200-115999600	Enhancers	Fetal Brain Female	brain
20	chr3:115998200-116006000	Weak transcription	Brain Germinal Matrix	brain
21	chr3:115998400-115998800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:115998400-115998800	Weak transcription	Brain Substantia Nigra	brain

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