Variant report

Variant	rs7678153
Chromosome Location	chr4:118307188-118307189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10006701	0.98[ASN][1000 genomes]
rs10025048	0.94[ASN][1000 genomes]
rs10031675	0.92[ASN][1000 genomes]
rs11098391	0.91[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11098392	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11098393	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11098394	0.97[ASN][1000 genomes]
rs11721879	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11722043	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11722980	0.85[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11723026	0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs11723116	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11726324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11727287	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs11727350	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs11729280	0.94[ASN][1000 genomes]
rs11729803	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs11731251	0.91[ASN][1000 genomes]
rs11737676	0.90[ASN][1000 genomes]
rs12330989	0.97[ASN][1000 genomes]
rs12331875	0.97[ASN][1000 genomes]
rs12648770	0.86[ASN][1000 genomes]
rs13129094	0.98[ASN][1000 genomes]
rs13136435	0.96[ASN][1000 genomes]
rs13340324	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17861177	0.91[CHB][hapmap];0.90[JPT][hapmap]
rs17861767	0.89[ASN][1000 genomes]
rs17861772	0.89[ASN][1000 genomes]
rs17861773	0.93[ASN][1000 genomes]
rs17861774	0.88[ASN][1000 genomes]
rs17861779	0.91[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs17861780	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs17861786	0.91[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs17861788	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17861793	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs17861794	0.91[ASN][1000 genomes]
rs17861795	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17861796	0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs17861797	0.92[ASN][1000 genomes]
rs17861798	0.92[ASN][1000 genomes]
rs17861801	0.92[ASN][1000 genomes]
rs17861803	0.92[ASN][1000 genomes]
rs17861804	0.92[ASN][1000 genomes]
rs17861808	0.98[ASN][1000 genomes]
rs17861810	0.92[ASN][1000 genomes]
rs17861819	0.92[ASN][1000 genomes]
rs17861839	0.93[ASN][1000 genomes]
rs17864921	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs17865343	0.89[ASN][1000 genomes]
rs17865971	0.91[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs17867050	0.92[ASN][1000 genomes]
rs17869517	0.92[ASN][1000 genomes]
rs28660474	0.98[ASN][1000 genomes]
rs3925016	0.98[ASN][1000 genomes]
rs4286610	0.97[ASN][1000 genomes]
rs4309912	0.97[ASN][1000 genomes]
rs4318720	0.86[JPT][hapmap]
rs4333258	0.92[ASN][1000 genomes]
rs4389632	0.89[ASN][1000 genomes]
rs4403116	0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4409028	0.94[ASN][1000 genomes]
rs4413474	0.92[ASN][1000 genomes]
rs4413475	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4521417	0.91[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4554147	1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.95[ASN][1000 genomes]
rs4576084	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs4619964	0.92[ASN][1000 genomes]
rs58529516	0.92[ASN][1000 genomes]
rs60992137	0.92[ASN][1000 genomes]
rs62313506	0.92[ASN][1000 genomes]
rs62313508	0.92[ASN][1000 genomes]
rs6834362	0.89[ASN][1000 genomes]
rs6852158	0.93[ASN][1000 genomes]
rs72621811	0.92[ASN][1000 genomes]
rs7683392	0.94[ASN][1000 genomes]
rs7691925	0.90[JPT][hapmap]
rs7696922	0.92[ASN][1000 genomes]
rs7696950	0.85[ASN][1000 genomes]
rs7697094	0.92[ASN][1000 genomes]
rs9985925	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv879825	chr4:118292314-118333367	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
4	nsv879826	chr4:118292314-118351381	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv470068	chr4:118296960-118327792	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7678153	IL1R1	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118306000-118307200	Weak transcription	Fetal Brain Male	brain
2	chr4:118306200-118307200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:118306600-118307800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:118306800-118307200	Enhancers	Brain Anterior Caudate	brain
5	chr4:118307000-118307600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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