Variant report

Variant	rs17865343
Chromosome Location	chr4:118273078-118273079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10006701	0.91[ASN][1000 genomes]
rs10025048	0.93[ASN][1000 genomes]
rs10031675	0.91[ASN][1000 genomes]
rs11098391	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11098392	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11098393	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11098394	0.87[ASN][1000 genomes]
rs11721879	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11722043	0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11722980	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11723026	0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11723116	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11726324	0.87[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs11727287	0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11727350	0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs11729280	0.90[ASN][1000 genomes]
rs11729803	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11731251	0.98[ASN][1000 genomes]
rs11737676	0.99[ASN][1000 genomes]
rs12330989	0.87[ASN][1000 genomes]
rs12331875	0.87[ASN][1000 genomes]
rs12648770	0.88[ASN][1000 genomes]
rs13129094	0.91[ASN][1000 genomes]
rs13136435	0.87[ASN][1000 genomes]
rs13340324	0.90[ASN][1000 genomes]
rs17861177	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs17861767	0.94[ASN][1000 genomes]
rs17861772	0.99[ASN][1000 genomes]
rs17861773	0.89[ASN][1000 genomes]
rs17861774	0.84[ASN][1000 genomes]
rs17861779	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17861780	0.96[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs17861786	0.96[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs17861788	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17861793	0.96[CHB][hapmap];0.95[JPT][hapmap]
rs17861794	0.95[ASN][1000 genomes]
rs17861795	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17861796	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17861797	0.96[ASN][1000 genomes]
rs17861798	0.96[ASN][1000 genomes]
rs17861801	0.96[ASN][1000 genomes]
rs17861803	0.96[ASN][1000 genomes]
rs17861804	0.96[ASN][1000 genomes]
rs17861808	0.91[ASN][1000 genomes]
rs17861810	0.96[ASN][1000 genomes]
rs17861819	0.96[ASN][1000 genomes]
rs17861839	0.95[ASN][1000 genomes]
rs17864921	0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs17865971	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs17867050	0.96[ASN][1000 genomes]
rs17869517	0.97[ASN][1000 genomes]
rs28660474	0.91[ASN][1000 genomes]
rs3925016	0.91[ASN][1000 genomes]
rs4286610	0.87[ASN][1000 genomes]
rs4309912	0.87[ASN][1000 genomes]
rs4318720	0.90[JPT][hapmap]
rs4333258	0.96[ASN][1000 genomes]
rs4389632	0.99[ASN][1000 genomes]
rs4403116	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4409028	0.90[ASN][1000 genomes]
rs4413474	0.91[ASN][1000 genomes]
rs4413475	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4521417	0.96[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs4554147	0.87[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs4576084	0.96[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs4619964	0.97[ASN][1000 genomes]
rs58529516	0.96[ASN][1000 genomes]
rs60992137	0.96[ASN][1000 genomes]
rs62313506	0.96[ASN][1000 genomes]
rs62313508	0.96[ASN][1000 genomes]
rs6834362	0.99[ASN][1000 genomes]
rs6852158	0.92[ASN][1000 genomes]
rs72621811	0.96[ASN][1000 genomes]
rs7678153	0.89[ASN][1000 genomes]
rs7683392	0.90[ASN][1000 genomes]
rs7691925	0.86[JPT][hapmap]
rs7696922	0.97[ASN][1000 genomes]
rs7696950	0.90[ASN][1000 genomes]
rs7697094	0.97[ASN][1000 genomes]
rs9985925	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000847	chr4:118186059-118285838	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1004858	chr4:118248984-118382051	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv427692	chr4:118262899-118437573	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:118258800-118278600	Weak transcription	HMEC	breast
2	chr4:118267200-118273200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links