Variant report

Variant	rs7683106
Chromosome Location	chr4:106970272-106970273
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106969485..106971896-chr4:106985535..106988027,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12509366	0.84[AFR][1000 genomes]
rs12509640	1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs12510966	1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs28391259	0.89[AFR][1000 genomes]
rs55633564	0.84[AFR][1000 genomes]
rs62321365	0.83[AFR][1000 genomes]
rs62321381	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6824682	0.87[AFR][1000 genomes]
rs6828362	0.83[AFR][1000 genomes]
rs6846579	1.00[LWK][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs72677306	0.84[AFR][1000 genomes]
rs727618	0.82[EUR][1000 genomes]
rs7657962	0.97[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7661499	0.89[AFR][1000 genomes]
rs7662592	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9991091	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106956800-106970800	Weak transcription	HSMMtube	muscle
2	chr4:106959600-106983400	Weak transcription	HepG2	liver
3	chr4:106962600-106970400	Weak transcription	Small Intestine	intestine
4	chr4:106964200-106972000	Weak transcription	Aorta	Aorta
5	chr4:106965800-106977600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:106967600-106970400	Weak transcription	HSMM	muscle
7	chr4:106967600-106983600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr4:106967600-106983800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:106967800-106971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:106967800-106971200	Weak transcription	Liver	Liver
11	chr4:106967800-106976400	Weak transcription	Psoas Muscle	Psoas
12	chr4:106967800-106984200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:106967800-106994600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr4:106968000-106977200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:106968000-106977200	Weak transcription	Primary T cells from cord blood	blood
16	chr4:106968000-106984600	Weak transcription	Primary B cells from cord blood	blood
17	chr4:106968200-106971200	Enhancers	Fetal Stomach	stomach
18	chr4:106969000-106971000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:106969400-106970400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:106969400-106970400	Enhancers	NHDF-Ad	bronchial
21	chr4:106969400-106970800	Enhancers	Colon Smooth Muscle	Colon
22	chr4:106969400-106970800	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr4:106969400-106971000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr4:106969400-106971200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:106969600-106970400	Enhancers	Osteobl	bone
26	chr4:106969600-106971000	Enhancers	Fetal Kidney	kidney
27	chr4:106969800-106970400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr4:106969800-106978200	Weak transcription	Ovary	ovary
29	chr4:106970000-106970400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr4:106970000-106970400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:106970000-106970400	Active TSS	Stomach Smooth Muscle	stomach
32	chr4:106970000-106971800	Weak transcription	Fetal Heart	heart
33	chr4:106970000-106977800	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr4:106970200-106970400	Flanking Active TSS	Fetal Lung	lung
35	chr4:106970200-106973600	Weak transcription	Brain Hippocampus Middle	brain

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