Variant report

Variant	rs7705676
Chromosome Location	chr5:35237736-35237737
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10472951	0.92[CHB][hapmap];0.85[EUR][1000 genomes]
rs10472952	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13354826	0.84[CHB][hapmap]
rs13361375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4703514	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727306	0.85[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs7727503	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7728298	0.85[GIH][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs9292580	0.88[EUR][1000 genomes]
rs9292581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292582	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7705676	NUP155	cis	parietal	SCAN
rs7705676	AGXT2	cis	cerebellum	SCAN
rs7705676	CDH6	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35230800-35246000	Weak transcription	Gastric	stomach
2	chr5:35230800-35247200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:35231000-35237800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:35231000-35237800	Weak transcription	Stomach Mucosa	stomach
5	chr5:35235800-35239200	Weak transcription	Pancreas	Pancrea
6	chr5:35237000-35238800	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:35237000-35239200	Enhancers	Fetal Intestine Small	intestine
8	chr5:35237600-35238000	Enhancers	HepG2	liver
9	chr5:35237600-35238600	Enhancers	Liver	Liver
10	chr5:35237600-35238600	Enhancers	Fetal Intestine Large	intestine
11	chr5:35237600-35238600	Enhancers	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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