Variant report

Variant	rs9292580
Chromosome Location	chr5:35238649-35238650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10472951	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472952	0.88[EUR][1000 genomes]
rs13361375	0.88[EUR][1000 genomes]
rs4703514	0.88[EUR][1000 genomes]
rs7705676	0.88[EUR][1000 genomes]
rs7710279	0.88[EUR][1000 genomes]
rs7727306	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7727503	0.88[EUR][1000 genomes]
rs9292581	0.88[EUR][1000 genomes]
rs9292582	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986182	0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35230800-35246000	Weak transcription	Gastric	stomach
2	chr5:35230800-35247200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:35235800-35239200	Weak transcription	Pancreas	Pancrea
4	chr5:35237000-35238800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:35237000-35239200	Enhancers	Fetal Intestine Small	intestine
6	chr5:35237800-35238800	Enhancers	Stomach Mucosa	stomach
7	chr5:35238200-35246200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:35238400-35238800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:35238400-35241200	Weak transcription	Fetal Heart	heart
10	chr5:35238400-35246200	Weak transcription	Fetal Lung	lung
11	chr5:35238600-35240200	Weak transcription	HepG2	liver
12	chr5:35238600-35240400	Weak transcription	Fetal Intestine Large	intestine
13	chr5:35238600-35246400	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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