Variant report

Variant	rs7727306
Chromosome Location	chr5:35237860-35237861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35235145..35237936-chr5:35268647..35271022,2	MCF-7	breast:
2	chr5:35228902..35231374-chr5:35237119..35239401,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10053574	0.82[JPT][hapmap]
rs10472951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472952	0.85[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.86[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs13154357	0.82[JPT][hapmap]
rs13354826	0.92[CHB][hapmap];0.82[CHD][hapmap];0.87[GIH][hapmap]
rs13361375	0.88[EUR][1000 genomes]
rs17317102	0.82[JPT][hapmap]
rs1864185	0.82[JPT][hapmap]
rs2047935	0.82[JPT][hapmap]
rs4703514	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs6451195	0.82[JPT][hapmap]
rs6451196	0.82[JPT][hapmap]
rs6870392	0.82[JPT][hapmap]
rs6890966	0.82[JPT][hapmap]
rs7705676	0.85[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs7710279	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs7715575	0.82[JPT][hapmap]
rs7715855	0.82[JPT][hapmap]
rs7727503	0.88[EUR][1000 genomes]
rs9292580	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292581	0.85[ASW][hapmap];0.85[CEU][hapmap];0.92[CHB][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.88[EUR][1000 genomes]
rs9292582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9986182	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7727306	NUP155	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35230800-35246000	Weak transcription	Gastric	stomach
2	chr5:35230800-35247200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:35235800-35239200	Weak transcription	Pancreas	Pancrea
4	chr5:35237000-35238800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr5:35237000-35239200	Enhancers	Fetal Intestine Small	intestine
6	chr5:35237600-35238000	Enhancers	HepG2	liver
7	chr5:35237600-35238600	Enhancers	Liver	Liver
8	chr5:35237600-35238600	Enhancers	Fetal Intestine Large	intestine
9	chr5:35237600-35238600	Enhancers	A549	lung
10	chr5:35237800-35238200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr5:35237800-35238400	Enhancers	Fetal Heart	heart
12	chr5:35237800-35238800	Enhancers	Stomach Mucosa	stomach

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