Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35229138..35231448-chr5:35486089..35488667,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11953352	0.82[ASN][1000 genomes]
rs12514711	0.82[EUR][1000 genomes]
rs1508658	0.81[ASN][1000 genomes]
rs16902130	0.88[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2036676	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs2397843	0.93[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs26205	0.88[EUR][1000 genomes]
rs284698	0.88[EUR][1000 genomes]
rs284742	0.84[ASN][1000 genomes]
rs284743	0.84[ASN][1000 genomes]
rs284746	0.84[ASN][1000 genomes]
rs284747	0.80[ASN][1000 genomes]
rs284748	0.84[ASN][1000 genomes]
rs284749	0.80[ASN][1000 genomes]
rs284750	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs284752	0.85[ASN][1000 genomes]
rs284753	0.85[ASN][1000 genomes]
rs284754	0.86[ASN][1000 genomes]
rs284755	0.86[ASN][1000 genomes]
rs284756	0.86[ASN][1000 genomes]
rs284764	0.86[ASN][1000 genomes]
rs284765	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs284766	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6872931	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35479800-35488600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:35484800-35488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:35484800-35488400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:35484800-35488600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:35485000-35488200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:35485000-35488400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr5:35486600-35488000	Weak transcription	HepG2	liver
8	chr5:35487000-35488200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr5:35487000-35488800	Enhancers	Fetal Lung	lung
10	chr5:35487200-35488800	Enhancers	Fetal Stomach	stomach
11	chr5:35487400-35487800	Enhancers	Fetal Kidney	kidney
12	chr5:35487400-35487800	Enhancers	Ovary	ovary
13	chr5:35487600-35487800	Enhancers	NHDF-Ad	bronchial
14	chr5:35487600-35488600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:35487600-35488600	Enhancers	Colon Smooth Muscle	Colon
16	chr5:35487600-35489000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:35487600-35489400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr5:35487600-35489400	Enhancers	Monocytes-CD14+_RO01746	blood

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