Variant report

Variant	rs2036676
Chromosome Location	chr5:35478333-35478334
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35229573..35231662-chr5:35476053..35479431,4	MCF-7	breast:
2	chr5:35478172..35480721-chr5:35482936..35485324,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10041120	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10044118	0.85[EUR][1000 genomes]
rs10044161	0.85[EUR][1000 genomes]
rs11750298	0.82[ASN][1000 genomes]
rs13181071	0.80[ASN][1000 genomes]
rs1508659	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1559274	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1559275	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs16902130	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17618846	0.91[EUR][1000 genomes]
rs2397843	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26198	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26199	0.85[EUR][1000 genomes]
rs26201	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26204	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs27762	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs27940	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28020	0.85[EUR][1000 genomes]
rs284692	0.85[EUR][1000 genomes]
rs284695	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284742	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284743	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284744	0.81[ASN][1000 genomes]
rs284746	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284747	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284748	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284749	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284750	0.94[ASN][1000 genomes]
rs284751	0.81[ASN][1000 genomes]
rs284752	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284753	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284754	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284755	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284756	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284757	0.81[ASN][1000 genomes]
rs284758	0.82[ASN][1000 genomes]
rs284760	0.81[ASN][1000 genomes]
rs284762	0.82[ASN][1000 genomes]
rs284764	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284765	0.95[CHB][hapmap];0.82[ASN][1000 genomes]
rs284766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32733	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs32754	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs32758	0.85[EUR][1000 genomes]
rs32789	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4461609	0.82[ASN][1000 genomes]
rs457255	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4703401	0.85[EUR][1000 genomes]
rs58530298	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6451200	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6865370	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6872931	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7705697	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35475400-35480400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:35476200-35479000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:35476400-35479000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:35477000-35479000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:35477200-35479200	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:35477200-35479400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr5:35477800-35479000	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr5:35478000-35478400	Enhancers	Ovary	ovary
10	chr5:35478000-35479200	Weak transcription	Fetal Kidney	kidney
11	chr5:35478000-35479200	Enhancers	NHDF-Ad	bronchial
12	chr5:35478200-35478400	Enhancers	Small Intestine	intestine
13	chr5:35478200-35479400	Enhancers	HepG2	liver

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