Variant report

Variant	rs10041120
Chromosome Location	chr5:35437198-35437199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35435688..35438525-chr5:35441764..35443934,2	MCF-7	breast:
2	chr5:35229277..35231238-chr5:35435964..35437893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10044118	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10044161	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508659	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1508660	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1559274	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1559275	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1605689	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902130	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17618846	0.86[EUR][1000 genomes]
rs2036676	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2397843	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26197	0.88[ASN][1000 genomes]
rs26198	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26199	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26200	0.88[ASN][1000 genomes]
rs26201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26203	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs26204	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26205	1.00[ASN][1000 genomes]
rs27487	0.96[ASN][1000 genomes]
rs27762	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs27940	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28020	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284692	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284693	0.88[ASN][1000 genomes]
rs284694	0.88[ASN][1000 genomes]
rs284695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284697	0.94[ASN][1000 genomes]
rs284698	0.98[ASN][1000 genomes]
rs284742	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284743	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284746	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284748	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs284752	0.85[EUR][1000 genomes]
rs284753	0.85[EUR][1000 genomes]
rs284754	0.85[EUR][1000 genomes]
rs284755	0.85[EUR][1000 genomes]
rs284756	0.85[EUR][1000 genomes]
rs284766	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs284767	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs284768	0.95[CHB][hapmap];0.86[JPT][hapmap]
rs284770	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap]
rs32733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs32754	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs32755	0.86[ASN][1000 genomes]
rs32758	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32789	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs32790	0.85[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs32791	0.95[ASN][1000 genomes]
rs39981	0.95[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs457255	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4703362	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703363	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703401	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4703402	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58530298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451200	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6865370	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6872931	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6897316	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35431800-35437800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:35434800-35437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:35436800-35438200	Weak transcription	Placenta Amnion	Placenta Amnion

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