Variant report

Variant	rs26203
Chromosome Location	chr5:35432075-35432076
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35431665..35434134-chr5:35435140..35436977,2	K562	blood:
2	chr5:35229197..35230970-chr5:35430863..35432528,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113494	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10041120	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs10044118	0.92[ASN][1000 genomes]
rs10044161	0.92[ASN][1000 genomes]
rs1508659	0.91[ASN][1000 genomes]
rs1508660	0.96[ASN][1000 genomes]
rs1605689	0.96[ASN][1000 genomes]
rs26197	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26198	0.87[ASN][1000 genomes]
rs26199	0.87[ASN][1000 genomes]
rs26200	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26201	0.87[ASN][1000 genomes]
rs26204	0.94[ASN][1000 genomes]
rs26205	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs27487	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs27762	0.87[ASN][1000 genomes]
rs27940	0.87[ASN][1000 genomes]
rs28020	0.87[ASN][1000 genomes]
rs284692	0.87[ASN][1000 genomes]
rs284693	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284694	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs284695	0.87[ASN][1000 genomes]
rs284697	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284698	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs284750	0.84[EUR][1000 genomes]
rs284767	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs284768	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs284770	0.85[CEU][hapmap];0.95[CHB][hapmap]
rs32733	0.94[ASN][1000 genomes]
rs32754	0.85[ASN][1000 genomes]
rs32755	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs32758	0.87[ASN][1000 genomes]
rs32789	0.90[ASN][1000 genomes]
rs32790	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.91[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs32791	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs39981	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs457255	0.87[ASN][1000 genomes]
rs4703362	0.96[ASN][1000 genomes]
rs4703363	0.96[ASN][1000 genomes]
rs4703401	0.92[ASN][1000 genomes]
rs4703402	0.96[ASN][1000 genomes]
rs58530298	0.91[ASN][1000 genomes]
rs6451200	0.91[ASN][1000 genomes]
rs6865370	0.94[ASN][1000 genomes]
rs6897316	0.96[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs26203	EGR2	trans	parietal	SCAN
rs26203	GDNF	cis	cerebellum	SCAN
rs26203	PRLR	cis	cerebellum	SCAN
rs26203	C5orf22	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35431600-35436600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr5:35431800-35437800	Weak transcription	Primary neutrophils fromperipheralblood	blood

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