Variant report

Variant	rs1508659
Chromosome Location	chr5:35455739-35455740
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10041120	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10044118	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10044161	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508660	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1559274	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1559275	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1605689	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902130	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17618846	0.81[EUR][1000 genomes]
rs2036676	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2397843	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs26197	0.85[ASN][1000 genomes]
rs26198	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26199	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26200	0.85[ASN][1000 genomes]
rs26201	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs26203	0.91[ASN][1000 genomes]
rs26204	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs26205	0.97[ASN][1000 genomes]
rs27487	0.93[ASN][1000 genomes]
rs27762	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27940	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28020	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284692	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284693	0.85[ASN][1000 genomes]
rs284694	0.85[ASN][1000 genomes]
rs284695	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs284697	0.94[ASN][1000 genomes]
rs284698	0.98[ASN][1000 genomes]
rs284742	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs284743	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs284746	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs284747	0.81[AMR][1000 genomes]
rs284748	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs284749	0.81[AMR][1000 genomes]
rs284752	0.89[EUR][1000 genomes]
rs284753	0.89[EUR][1000 genomes]
rs284754	0.89[EUR][1000 genomes]
rs284755	0.89[EUR][1000 genomes]
rs284756	0.89[EUR][1000 genomes]
rs284766	0.89[EUR][1000 genomes]
rs32733	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs32754	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs32755	0.83[ASN][1000 genomes]
rs32758	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs32789	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs32790	0.88[ASN][1000 genomes]
rs32791	0.92[ASN][1000 genomes]
rs39981	0.91[ASN][1000 genomes]
rs457255	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4703362	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703363	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4703401	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4703402	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58530298	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6451200	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865370	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6872931	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6897316	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35455000-35457000	Weak transcription	Placenta	Placenta

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