Variant report

Variant	rs284749
Chromosome Location	chr5:35471762-35471763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35463039..35464733-chr5:35469532..35472198,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11750298	0.84[ASN][1000 genomes]
rs13181071	0.82[ASN][1000 genomes]
rs1508659	0.81[AMR][1000 genomes]
rs1508660	0.88[EUR][1000 genomes]
rs1559275	0.80[AMR][1000 genomes]
rs1605689	0.88[EUR][1000 genomes]
rs16902130	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2036676	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2397843	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284742	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284743	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284744	0.86[ASN][1000 genomes]
rs284746	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284747	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284748	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs284750	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs284751	0.86[ASN][1000 genomes]
rs284752	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284753	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs284754	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284755	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284756	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs284757	0.83[ASN][1000 genomes]
rs284758	0.84[ASN][1000 genomes]
rs284760	0.83[ASN][1000 genomes]
rs284762	0.84[ASN][1000 genomes]
rs284764	0.94[ASN][1000 genomes]
rs284765	0.84[ASN][1000 genomes]
rs284766	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4461609	0.84[ASN][1000 genomes]
rs4703362	0.87[EUR][1000 genomes]
rs4703363	0.87[EUR][1000 genomes]
rs4703402	0.87[EUR][1000 genomes]
rs6872931	0.82[AMR][1000 genomes]
rs6897316	0.88[EUR][1000 genomes]
rs7705697	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35471000-35475000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35471200-35473200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:35471200-35475800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:35471400-35471800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:35471400-35472000	Weak transcription	Placenta	Placenta
7	chr5:35471600-35476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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