Variant report

Variant	rs284758
Chromosome Location	chr5:35474159-35474160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11750298	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11953352	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13177312	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13181071	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1508658	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16902130	0.81[ASN][1000 genomes]
rs2036676	0.82[ASN][1000 genomes]
rs2397843	0.82[ASN][1000 genomes]
rs284742	0.81[ASN][1000 genomes]
rs284743	0.81[ASN][1000 genomes]
rs284744	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs284746	0.81[ASN][1000 genomes]
rs284747	0.84[ASN][1000 genomes]
rs284748	0.81[ASN][1000 genomes]
rs284749	0.84[ASN][1000 genomes]
rs284750	0.84[ASN][1000 genomes]
rs284751	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs284752	0.81[ASN][1000 genomes]
rs284753	0.81[ASN][1000 genomes]
rs284754	0.82[ASN][1000 genomes]
rs284755	0.82[ASN][1000 genomes]
rs284756	0.82[ASN][1000 genomes]
rs284757	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284759	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs284760	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs284762	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284764	0.82[ASN][1000 genomes]
rs284765	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs284766	0.82[ASN][1000 genomes]
rs4461609	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35469200-35479400	Weak transcription	Pancreas	Pancrea
2	chr5:35471000-35475000	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35471200-35475800	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr5:35471600-35476400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:35474000-35478000	Weak transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links