Variant report

Variant	rs11953352
Chromosome Location	chr5:35484319-35484320
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35478172..35480721-chr5:35482936..35485324,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11750298	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13177312	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13181071	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1508658	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2036676	0.86[CHB][hapmap]
rs284744	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs284751	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs284757	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs284758	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284759	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs284760	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs284762	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284765	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs284766	0.87[CHB][hapmap]
rs4461609	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7705697	0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018541	chr5:35446209-35491185	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030395	chr5:35446516-35491185	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35479800-35488600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr5:35481600-35485200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr5:35482000-35485000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr5:35482000-35485200	Enhancers	Fetal Kidney	kidney
5	chr5:35482200-35484800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:35482200-35485000	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:35482400-35484600	Enhancers	Fetal Lung	lung
8	chr5:35482400-35485000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:35482400-35485200	Enhancers	Fetal Intestine Large	intestine
10	chr5:35482400-35486200	Enhancers	Liver	Liver
11	chr5:35482600-35486200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:35482800-35484800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr5:35482800-35485600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:35482800-35486800	Weak transcription	Esophagus	oesophagus
15	chr5:35483000-35486800	Weak transcription	Ovary	ovary
16	chr5:35483200-35484400	Weak transcription	Fetal Intestine Small	intestine
17	chr5:35483200-35484600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:35483400-35484800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr5:35483600-35484800	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr5:35483800-35485000	Enhancers	Colon Smooth Muscle	Colon
21	chr5:35484000-35484400	Active TSS	HepG2	liver
22	chr5:35484000-35487200	Weak transcription	Fetal Stomach	stomach
23	chr5:35484200-35485600	Enhancers	Monocytes-CD14+_RO01746	blood

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